Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0055 ATGGACTTGAAGTCAAATCATACTCCTATTCTCACTGATGCTGCACCCATAACGAATTCAAGACTGCATGTGCATTCCAGTTTGTTTCCTTATTCCCATACTGGGGTAACCTGTCCACATAGCATGTTATTGACTATCCCGAGGAAGAAGACAGGAATTCTTGAAGATGTTCGTTGTAGCAGTTGGTTGGATGCCATGAAATCATCTTCACCTCCACCCAAGAATATGACAAGGGATGTTAGTCATGGGTTTGCATCATCTGAAGCTGATACTGCTTTTGCTTATTTTACCTGGCTGCTAAAATATCCATCAGCACTTACATCTTTTGATCAAATTACAAACTATGCAAAAAGCAAGAGAATTGCATTGTTTCTGGACTATGATGGGACTCTTTCACCGATTGTGGATAATCCTGACTGCGCTTTCATGTCTGACCATATGCGTGCTGCTGTTAAAAAGGTTGCTGAATATTTTCCTACAGCAATAATTAGTGGAAGAAGCCGTGACAAGGTAAATGAATTTGTAGGACTAACAGAACTCTATTATGCTGGTAGTCATGGGATGGACATCATTGGCCCTGTTAGACAATCTGTATCTGATAACCACACTAATTGCATCATTAGATCTACAGACAAGCAGGGTAAGGAAGTTAACTTATTCCAACCTGCTGCTGAATTTGTACCCATGATTAATGAGGTCCGCGAGTCTCTCATAGAGTGTACTAAAGACATTAAAGGAGCAAGAGTTGAGGACAACAAATTTTGTGTATCTGTACATTACCGCAATGTAGATGAAAAGAATTGGAATTTGGTGGGGCAACGTGTTAATGATGTTCTGAAGGGCTACCCACGTTTGCGATTAACTCACGGGCGCAAGGTTTTAGAGGTCCGCCCTGTAATTAACTGGGATAAGGGTAAAGCTGTCACATTTTTGCTCGAGTCACTTGGACTTGACAATTGTGATGATGTGCTTCCTATATATATTGGAGATGATCGAACGGATGAAGATGCGTTTAAGGTTCTGAGAGAGGGGAATAAAGGTTACGGGATCTTAGTATCTTCAGCACCAAAGGAAAGCAATGCAATTTACTCTCTTCGTGATCCACCAGAGGTGATGGAATTTCTGAAGTCACTTGTGTTTTTTGGATTTTGGGTTTTTCTAGGAAACATTCCAAGAGATTTCATGGAGCAGATTTACGCACAGAAGACTTCTTATGGTAGCAACAACATTGTCGCTACCTAG 1242 0.409 MDLKSNHTPILTDAAPITNSRLHVHSSLFPYSHTGVTCPHSMLLTIPRKKTGILEDVRCSSWLDAMKSSSPPPKNMTRDVSHGFASSEADTAFAYFTWLLKYPSALTSFDQITNYAKSKRIALFLDYDGTLSPIVDNPDCAFMSDHMRAAVKKVAEYFPTAIISGRSRDKVNEFVGLTELYYAGSHGMDIIGPVRQSVSDNHTNCIIRSTDKQGKEVNLFQPAAEFVPMINEVRESLIECTKDIKGARVEDNKFCVSVHYRNVDEKNWNLVGQRVNDVLKGYPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGLDNCDDVLPIYIGDDRTDEDAFKVLREGNKGYGILVSSAPKESNAIYSLRDPPEVMEFLKSLVFFGFWVFLGNIPRDFMEQIYAQKTSYGSNNIVAT* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0055 413 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 380 IPR044651 GO:0004805|GO:0005992
Lja3g0055 413 SUPERFAMILY HAD-like 122 379 IPR036412 -
Lja3g0055 413 Pfam Trehalose-phosphatase 124 368 IPR003337 GO:0003824|GO:0005992
Lja3g0055 413 Gene3D - 121 209 IPR023214 -
Lja3g0055 413 Gene3D - 221 381 IPR023214 -
Lja3g0055 413 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 123 342 IPR006379 -
Lja3g0055 413 CDD HAD_TPP 122 373 - -
Lja3g0055 413 TIGRFAM T6PP: trehalose-phosphatase 118 379 IPR003337 GO:0003824|GO:0005992
Lja3g0055 413 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0055 Lja-Chr3 651957 657906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0055 115 378 Trehalose Biosynthesis Gene Families AT1G70290 26.596 7.73e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0055 K01087 - gmx:100775207 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0055 3 651957 657906 Lja3g0055 3 651957 657906 ECH