Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0052 ATGGCTCGTGGAAAGGTTCAGCTGAGGCGAATTGAGAACCCGGTGCATAGGCAAGTTACCTTCTGCAAGCGGCGAGCAGGGCTTCTGAAGAAGGCTAAGGAGCTTTCTGTGCTGTGTGATGCTGAAATTGGCCTTGTCATTTTCTCCGCGCAAGGAAAGCTCTATGAACTCACCACCAAAGGAACTATGCAAGGGCTCATAGAGAGGTACATGAATTACACACGAGAGGCTGAACCTGAAGCAGTCACTCAAGCGCGTCCTCTGGATGCTAAAGAGGAAACCAATGTGCTAAAACAAGAAATCGACAAATTGCAAAAGGGTATCAGGTATTTGTTTGGAGGAGGATTGGGGACAATGAAAATGGATGAATTACACGTGCTGGAAAAGAATCTTGAAACTTGGATTTATCATGTTCGCTCCATGAAGATGAACATCATGTTACAAGAAATTCAAGCTTTGAGAGATAAGGAGGGAACACTTAAGGCGGCAAATAAATATCTTCATGACATGGTTGTGGAGAATACTTCAGTTACTAACTTTGATCCATTTGCTACTGATCCTTTATACCCACTAATTATACAAGATGGGGGTTTTCAGTTCTAG 603 0.4328 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAQGKLYELTTKGTMQGLIERYMNYTREAEPEAVTQARPLDAKEETNVLKQEIDKLQKGIRYLFGGGLGTMKMDELHVLEKNLETWIYHVRSMKMNIMLQEIQALRDKEGTLKAANKYLHDMVVENTSVTNFDPFATDPLYPLIIQDGGFQF* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0052 200 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja3g0052 200 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja3g0052 200 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja3g0052 200 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja3g0052 200 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
Lja3g0052 200 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Lja3g0052 200 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 200 - -
Lja3g0052 200 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja3g0052 200 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lja3g0052 200 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 200 - -
Lja3g0052 200 Pfam K-box region 90 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja3g0052 200 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Lja3g0052 200 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja3g0052 200 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0052 Lja-Chr3 605992 609478 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0052 1 200 MADS-box Gene Family AT1G71692 61.137 1.60e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja3g0052 K-box 1.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0052 - - gmx:100783345 319.316