Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0051 ATGAATGCATTTTCTCATGTCCCCCCAGGTTTCAGGTTCCATCCCACGGATGAAGAACTTGTTGACTACTACCTCAGGAAGAAAGTTGCTTCAAGGAAGATTGACCTTGATGTCATCAAGGATGTTGACCTTTACAAAATTGAGCCATGGGATCTTCAAGAGATTTGCAGAATAGGAAGAGAAGAGCAAAGTGATTGGTACTTCTTTAGCCACAAAGACAAGAAGTATCCAACTGGAACACGCACAAATAGGGCAACAGCTGCAGGATTTTGGAAAGCTACTGGAAGAGACAAAGCAATCTACTCAAAGCATGACCTAATTGGGATGAGGAAGACCTTAGTCTTTTATAAAGGTCGAGCTCCCAATGGACAAAAGTCTGATTGGATCATGCACGAGTATCGCCTTGAAACTGATGAAAATGCCACACCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGAGTTGCAGCAACAAGCATGCGTAGAGTGAGTGAACATGACTCCCCTTGTTGGTATGATGACCAAGTCTCTTTCATGCCAGATTTGGACTCACCAAAACAAACCTCTCAATCCAATATGAATTTGGTCTACCAGCAGCTACCATATAATAATAACCCTTGCAAGAAAGAGCTAGAATTTCCCTACCAATTGCCTCGAGAACACTTTCTCCAGCTTCCATTTCTAGAGAGCCCTAAAATACAGCTTCAATCTTCTTCCACCATGGAACCCTTTGGTGGTAGCCATGCAACTACTCTACTACAAGAAGAACAAGTTCAACTACAAACTGGTCATCAGCAAAACTTTCAGGCAATGATGTATGGCAACAACAATAATAATACCAATAACATTGAAGAACAAGTTACTGATTGGAGAGTGCTTGACAAGTTTGTTGCTTCACAACTTAGTCAAGATGATCATGCTGCATCCAATTCCAAAGACAATAATAATAGCTACTCATCAAACACTGCACCAGCCAACATGTTCCATTCCACAGATAATAACAATGGCGCCCTGCAGTTCACACATTTGGACAAACAAGACATGGTGCCTGAAAATGCAGCATGGAAATAG 1080 0.4167 MNAFSHVPPGFRFHPTDEELVDYYLRKKVASRKIDLDVIKDVDLYKIEPWDLQEICRIGREEQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENATPQEEGWVVCRVFKKRVAATSMRRVSEHDSPCWYDDQVSFMPDLDSPKQTSQSNMNLVYQQLPYNNNPCKKELEFPYQLPREHFLQLPFLESPKIQLQSSSTMEPFGGSHATTLLQEEQVQLQTGHQQNFQAMMYGNNNNNTNNIEEQVTDWRVLDKFVASQLSQDDHAASNSKDNNNSYSSNTAPANMFHSTDNNNGALQFTHLDKQDMVPENAAWK* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0051 359 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Lja3g0051 359 MobiDBLite consensus disorder prediction 306 340 - -
Lja3g0051 359 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Lja3g0051 359 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 356 - -
Lja3g0051 359 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Lja3g0051 359 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Lja3g0051 359 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0051 Lja-Chr3 595233 598178 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0051 1 326 NAC Transcription Factor Family AT1G12260 59.249 3.18e-131 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja3g0051 NAM 6.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0051 - - gmx:100815845 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0051 3 595233 598178 Lja3g0051 3 595233 598178 ECH