Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0050 ATGGCAATCATGGGAAAGACACTCTTGGCACTTTTATTGTTGTCATCAATTTTCTCCATAGCCTTATCATCAAAGAAAAGAAGATCATCCTACAATAACATAGATTGGTGGTGCAACCAAACACCATACCCTGAGCAATGCAAATGCCTGAAGCAAGACCACAATTACCCTCACAGGATCAAACACAAAACCGAATTCCGAAACATTATGGTGCATCTAGCCTTAGAGAGAGCAGTTCTTATGCGAAAGCAAGCACGCGAGTTCGAGCAAACCTCGACCACCAGGAAGCAGAGATCTGTGTCACGTGATTGCGTGAGGCTCTATGATAACACCGTGTGGCACCTGAACCGAACCTTCCAATTCCTTCATGACAAGAACAAGAGAAGGAAAGAGTGTTCACCTTTCGATGCACAAACATGGCTCAGCACTTCTCGCACCAACATCCAAACATGTCAACGCGGGGCCTTAGAACTAAGAATTCCACATTTCATCGTCCCAATTATGAAGAACAATGTCACTGAGATCATAAGCAATGGTTTATACGTTAATTGGGGTTTCGTGAAACAGGAAAAAGAGCATTACACAGGGGATGCAGAGTATAATACAGAGAAAACAGAGCATTTTACTGAAAATTACACAGAGGAAACAGAGCATGATACAGAGAAAACAGAGCATCACACAGGGGAATCAAGGGAAGGTGGGTTTCCAAGGTGGTTTTCCACGCACGAGAGGAAGCTGTTGCAGTCTTCTAAGATAAAGGCACATCTTGTGGTGGCAAAAGATGGTTCTGGGCATTTCAAGACTGTTCAAGCTGCTCTGGATATGGCGGCAAGGAGAAGGTTCAAGACGAGGTTTATTATACGTGTGAAAACAGGGGTTTACAAAGAGAATATTGAGGTTGACAAGGCGAATGATAACATCATGTTGGTTGGTGATGGGATGAAAAACACCGTGATTACAAGTGGGAGGAGCGTTAGAGATGGCTTTACCACCTATAGCAGTGCAACAGCAGGAATTGATGGACCGCACTTCATTGCACGTGACATAACGTTCGAGAACACAGCTGGACCTCGTAAAGGCCAAGCAGTGGCACTTCGATCAGCCTCTGACCTCTCTGTGTTCCACCGTTGTTCCATCAAAGGCTACCAAGACACCCTCATGGTCCACGCACAACGTCAGTTCTACAAAGAATGTTACATCTTTGGCACCGTTGATTTCATCTTTGGTAACGCCGCAGTGGTATTCCAAAACTGCATCATCCTTGTAAGAAGGCCTTTACCAGGCCAAGGAAACATGATCACAGCCCAAGGTCGAGACGACCCGTTTCAAAACACCGGGATCTCATTCCACAATTGTCAAATCAGGCCCGCTCCGGATCTGAAGCCTGTCATTTCCAAGTTCCCCACGTTCTTAGGACGGCCTTGGCAAAGATACTCTAGAGTAGTGGTCATGAAGACATTCATGGATACCTTGGTGAGCCCAACGGGCTGGTCACCATGGGGGAATACTAATTTTGCTCAGAGCACTCTTTATTATGGTGAGTACAGAAACTCTGGGCCTGGTTCATCCACCAGAAACAGGGTACGATGGCCCGGTTACCATGTCATAACAAGCCCAACTGAGGCATCACGTTTCACTGTTGCTAGTCTTCTTGCTGGAAATTCATGGTTGCCTACCACTGGTGTGCCATTCAAATCCGGCCTGTAA 1707 0.4605 MAIMGKTLLALLLLSSIFSIALSSKKRRSSYNNIDWWCNQTPYPEQCKCLKQDHNYPHRIKHKTEFRNIMVHLALERAVLMRKQAREFEQTSTTRKQRSVSRDCVRLYDNTVWHLNRTFQFLHDKNKRRKECSPFDAQTWLSTSRTNIQTCQRGALELRIPHFIVPIMKNNVTEIISNGLYVNWGFVKQEKEHYTGDAEYNTEKTEHFTENYTEETEHDTEKTEHHTGESREGGFPRWFSTHERKLLQSSKIKAHLVVAKDGSGHFKTVQAALDMAARRRFKTRFIIRVKTGVYKENIEVDKANDNIMLVGDGMKNTVITSGRSVRDGFTTYSSATAGIDGPHFIARDITFENTAGPRKGQAVALRSASDLSVFHRCSIKGYQDTLMVHAQRQFYKECYIFGTVDFIFGNAAVVFQNCIILVRRPLPGQGNMITAQGRDDPFQNTGISFHNCQIRPAPDLKPVISKFPTFLGRPWQRYSRVVVMKTFMDTLVSPTGWSPWGNTNFAQSTLYYGEYRNSGPGSSTRNRVRWPGYHVITSPTEASRFTVASLLAGNSWLPTTGVPFKSGL* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0050 568 SMART PMEI_2 29 182 IPR006501 GO:0004857
Lja3g0050 568 Gene3D - 248 568 IPR012334 -
Lja3g0050 568 Pfam Pectinesterase 256 554 IPR000070 GO:0030599|GO:0042545
Lja3g0050 568 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Lja3g0050 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 182 IPR035513 -
Lja3g0050 568 Pfam Plant invertase/pectin methylesterase inhibitor 33 180 IPR006501 GO:0004857
Lja3g0050 568 MobiDBLite consensus disorder prediction 212 236 - -
Lja3g0050 568 CDD PMEI-like_3 36 183 - -
Lja3g0050 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 184 IPR035513 -
Lja3g0050 568 SUPERFAMILY Pectin lyase-like 252 566 IPR011050 -
Lja3g0050 568 PANTHER PECTINESTERASE 229 567 - -
Lja3g0050 568 PANTHER PECTINESTERASE 1 189 - -
Lja3g0050 568 PANTHER PECTINESTERASE 1 189 - -
Lja3g0050 568 PANTHER PECTINESTERASE 229 567 - -
Lja3g0050 568 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 176 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0050 Lja-Chr3 569608 579229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0050 33 568 Carbohydrate Esterase AT5G51500 54.360 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0050 K01051 - gmx:100807908 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0050 3 569608 579229 Lja3g0050 3 569608 579229 ECH