Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0048 ATGGCCAAGAAACAGGGGATGAAGCCAAGAGAGGTTGCTGCCATGCAGGACTGCGTGGAGGTGCTGAGTGACTCGGTGGATGAACTCAGAAGGTCAATTGCTGAGTTGGGTAATCTCAAGACTTCGAACTTTGAGATGACGATGAGCGATGTGCAGACTTGGGTGAGTGCTGCTTTGACAGATGAGAGCACTTGCACTGATGGGTTCCAACAACAACAGAGTGAAGATGCTGTGAATGAAGATGATAAGTCTGCTGTGAGAGTTAGAGTTGTGCAGACAGCTCAATTGACTACTAACCCTTTGAAGCTCTGCAATGTTTCTCTCTCACTAGCCTTAAGTTCTGCTTATCGTGCCACTAACACCGTATCAAAGCTTTTGAAGCACAATGACGATCTGGCACACACAACAGAACAAGTGGTGGAGGATTGCTTTGAGAATCTGAAGGAATCCATTGGAGAGCTTCAGGATTCTCTTGCTGCCATGGGAAATTTGAATGGATTTGATAAAGGGTTTCAGGTCAGCAACATCAAGACGTGGGTGAGTGCAGCTATGACCGATGGTCAAACGTGTTCTGATGGGTTTGATGAGGAAAATTACATGGATGGTGCTGTGAGGGACAAGATCAGAAAGAATGTTTTGAAGGTGTTGAGGATAACAAGCAATGCTTTGTATTTCATTAACAATCTCAACTACTAA 696 0.4483 MAKKQGMKPREVAAMQDCVEVLSDSVDELRRSIAELGNLKTSNFEMTMSDVQTWVSAALTDESTCTDGFQQQQSEDAVNEDDKSAVRVRVVQTAQLTTNPLKLCNVSLSLALSSAYRATNTVSKLLKHNDDLAHTTEQVVEDCFENLKESIGELQDSLAAMGNLNGFDKGFQVSNIKTWVSAAMTDGQTCSDGFDEENYMDGAVRDKIRKNVLKVLRITSNALYFINNLNY* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0048 231 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 90 IPR035513 -
Lja3g0048 231 SMART PMEI_2 1 85 IPR006501 GO:0004857
Lja3g0048 231 SMART PMEI_2 86 225 IPR006501 GO:0004857
Lja3g0048 231 PANTHER PECTINESTERASE INHIBITOR-LIKE 1 101 - -
Lja3g0048 231 PANTHER PECTINESTERASE INHIBITOR-LIKE 97 229 - -
Lja3g0048 231 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 4 103 IPR035513 -
Lja3g0048 231 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 96 229 IPR035513 -
Lja3g0048 231 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 81 IPR006501 GO:0004857
Lja3g0048 231 TIGRFAM PME_inhib: pectinesterase inhibitor domain 97 229 IPR006501 GO:0004857
Lja3g0048 231 CDD PMEI-like_3 97 229 - -
Lja3g0048 231 PANTHER 21 KDA PROTEIN-LIKE 1 101 - -
Lja3g0048 231 PANTHER 21 KDA PROTEIN-LIKE 97 229 - -
Lja3g0048 231 Pfam Plant invertase/pectin methylesterase inhibitor 6 102 IPR006501 GO:0004857
Lja3g0048 231 Pfam Plant invertase/pectin methylesterase inhibitor 99 223 IPR006501 GO:0004857
Lja3g0048 231 CDD PMEI-like_3 1 101 - -
Lja3g0048 231 Gene3D Invertase/pectin methylesterase inhibitor family protein 91 230 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0048 Lja-Chr3 534344 539131 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0048 1 80 Carbohydrate Esterase AT1G53830 33.333 1.19e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0048 - - gmx:100527443 154.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0048 3 534344 539131 Lja3g0048 3 534344 539131 ECH