Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0047 ATGCATGCATTTTTCTACGGAAGCAATAAACCAATGGCTTTGCACTTGCACATTAGTGATCTTGTTTCAATGCCCCGTTGCTTCAGATTACTTGTGTGTGCATTCCTTCTATTCATCTCAACCACCCTTGTTGTTCAAGCAGCATCTGATTCTGTAGCAAGAAACTCCACCACCAATACTACCCTGCTCAATGCCTCCAAAAAGTTCATACGAAACCAGTGCAATTCAACTGCCACTTACCCAAATGTTTGTTACAACTCTCTCTCCCCGTACGCATCAAAAATCAAATCCAACCGTTTGATACTCACCAGAGTCTCTGTTCTTCTGGCTCTGAAAGCAGCAAGAGCTTCATCTAGGGTAATGACAAGGCTATCCAAGTTGAACACCCTGACACATGATGAGACCTTGGTCGTTGCTGATTGCGGAGAGAACATTGATGACACAGTGGATCTGCTTGAGCAATCTGCTGATGGCATTTTGCATTTGAATGGCACGAGAACTAATGAGGATAGATTTCAATGGGATGACATAAAGACATGGATGAGTGCGGCCATAACTGATGACTATACATGCACGGATGAGTTTCATGAAATGGAAGTGCGGCCTTCAGTGCAGAAGATGATCAAAACCAGTGTTGATTATGCGGAATGGATGACTAGCAATGCCTTGGCTTTCGTAAACAGGCTTGCCTACTAA 696 0.4368 MHAFFYGSNKPMALHLHISDLVSMPRCFRLLVCAFLLFISTTLVVQAASDSVARNSTTNTTLLNASKKFIRNQCNSTATYPNVCYNSLSPYASKIKSNRLILTRVSVLLALKAARASSRVMTRLSKLNTLTHDETLVVADCGENIDDTVDLLEQSADGILHLNGTRTNEDRFQWDDIKTWMSAAITDDYTCTDEFHEMEVRPSVQKMIKTSVDYAEWMTSNALAFVNRLAY* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0047 231 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 21 229 - -
Lja3g0047 231 SMART PMEI_2 65 225 IPR006501 GO:0004857
Lja3g0047 231 TIGRFAM PME_inhib: pectinesterase inhibitor domain 37 229 IPR006501 GO:0004857
Lja3g0047 231 Pfam Plant invertase/pectin methylesterase inhibitor 68 224 IPR006501 GO:0004857
Lja3g0047 231 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 230 IPR035513 -
Lja3g0047 231 CDD PMEI-like_3 74 230 - -
Lja3g0047 231 PANTHER PECTINESTERASE INHIBITOR-LIKE 21 229 - -
Lja3g0047 231 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 229 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0047 Lja-Chr3 530183 531158 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0047 60 229 Carbohydrate Esterase AT1G53830 29.240 2.75e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0047 - - mtr:MTR_4g035855 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0047 3 530183 531158 Lja3g0047 3 530183 531158 ECH