Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0044 ATGTCGTCCACCCCTCAGCCGCCGCGTTCTCCCCAACCCCATTCCGCTCCGGGGACCCCCTCGCCCCTCGCCTCCAGAGCTAAGCTCCAGAAAACTCCCCACATCCTAAATCGACGCGCCGCCGATGATGATGATGATGAAGACGAACCAGAAGAAGACAAACCGGAACACGAGAAGGAAGAAGGTGTACGTGTACGTCCCGGTTCTCCTTCCATCTTGCTCGCCTCGGCCTTAGGGCTCAACCACATTCGCACGCGCTACTCTTCCTCGCCTCTTCGCTACTCTTCCTCCCTTGGCGCCCCTCCCATCTTCCCAAAGGACGCCAAACCCAGATCCAAACCTTCCCATTCCAAGGACCTAGGGGGAAAAGCTCATTGGTCTCAGTCCAAATCGTTGAAAGCTCATTCACATCTTCTTCCTGAGGGTAATCATGCCGCTTTCGCCAAAGAAATGCAATCCCCACGTTTTCAGGAAATCCTGCGTCTCACCAGTGGCCGCAAAAAGAGAAACCCTGATATTAAGAGCTTTTCCGTGGAGCTCAACTCCAAAGGAGTTAGGCCTTTTCCCATCTGGAAACATCGTGTCTTTGGGCACATGGAGGAAGCCATGTTGGCAATTAGAGCTAAGTTTGAAAAGTTGAAGGAAGAAGTTGATTCTGACTTGGGTGGTTTTGCTGGAGATTTGGTGGGTACTCTTGAAAAGATTTCAGGGTCTCATTCTGAATGGAAAGAGAGGTTGGAGGATCTGCTTGTTGTTGCTCGACAATGCGCAAAGATGTCACCTGCTGAGTTTTGGATCAAATGTGAATCTATTGTTCAAAGTCTTGATGACAAGCGTCAAGAATTACCAGTGGGGGTCCTCAAGCAAGCTCATACGCGCCTGCTATTTATTCTCACTCGGTGCACTCGCCTAGTGCAATTTCAGAAGGAAAGTGGCTATGAACAGGATCACATTCTGGGTCTTCACCAACTCAGTGATCTCGGAGTATATCCAGAACAAATTGCAAAGTCTTCACAGCAGAAACCACCAAGTATTCCACCTAGTGGACATGAGATGGCTGAGAAGCAGTTTAGAAAGTCACATGGAAAAGAGCAAGATAAGCTGATGACAAAACAAAGTCAAGTTGACCAACTTGCAAGTGTTGTGAATGACAATGTGGAGGTTCCATCTGCTGAATCAACTCCTAGCAGCTATAGGATGTCTTCCTGGAGAAAGCTTCCATCTGCTGCTGAGAAAAAGCGCAAAGACCAAGATGCCGCAGACTCTCCATCCAACGATCATTTGCTAGTCAAAGATGAAAATGCTGAAAATTTGGATACTTTATCATGTCATCCTGAACATTCACAGTCATCCTCCAGAACGAGGAAGGCTTCTTGGGGATTCTGGGGAGATCAGCAAAATCTATCATATGAGGATTCAATGATCTGCAGGATTTGTGAGGTTGAAATACCAATTGTACATGTGGAGGAGCATTCTCGAATATGCACAATTGCTGATCGGTGCGATTTGAAAGGCTTAACTGTAAATGAACGCCTTGAAAGAGTTTGTGAAACTATTGAGAGGATACTGGAATCTTGGACACCAAAAAGCACACCAAAAAGCACCGATACTCCTGGAGAAACCTTTGAGATGGTTAGAGTATCAACATCAAGTGTGCATGAAGAATTCAATGAGTTATCTTCAGAGAGAAATAACTTAACATGTAGATGCTCTGAAGACATGCTTGACCATACCTCTGAAGCTGACAGTACTTTTGTCATGGATGATCTGAACCTTTCATCTGAAATATCATGTGAAGCACGTATCTGCTTAAAACCTGATCTTGGCACAAAGGTATCTTCAGCCGGAAGCTTGACACCGAGGTCACCGTTGGTAACACCACGGACCAGTCAGATAGAAATGTTACTAAGTGGGCGGAGAACATTATCTGAGCTTGAGAGTTATGATCAGATAAACAAGCTAGTTGAAATAGCTCGTGCTATAGCAAATGTGAACAACTGTGACTACAGTGCTTTGGAGTATATGCTGGATCGCTTAGAGGACCTGAAATATGCAATCCAAGATAGAAAAGTGGATGCACTTATAGTGGAGACTTTTGGACGACGAATAGAAAAACTTTTGCAGGAGAAATACATATCTCTTTGTGGGCAGATAGAAGATGAAAAGGTAGATTCATCAACTAGCAATGCTGATGAAGAGAGTTCAGTGGAAGACGATACAGTCCGAAGCCTTCGTGCTAGCCCAATAAATACTTGTTCTAAGGACCGAACCTCTATTGAAGATTTTGAAATAATAAAACCAATAAGCAGGGGTGCATTTGGACGAGTATTTCTTGCCCGAAAAAGAGCAACTGGTGATTTATTTGCTATAAAGGTTCTGAAAAAGAAAGATATGATCCGCAAAAATGCAGTACAGAGTATTTTGGCTGAGCGAGACATCCTTATATCTGTTCGAAACCCTTTCGTGGTCCGGTTTTTCTACTCTTTCACATGTAGGGAAAATCTTTATCTGGTAATGGAGTATTTAAATGGCGGAGATCTTTATTCTCTGTTGAGAAATCTAGGTTGCTTAGATGAAGCTATGGCTCGTGTATATATTGCAGAAGTTGTTCTTGCTTTGGAGTATTTACATTCCTTAAATGTGATTCACAGAGACTTGAAACCAGATAACTTGTTGATTGGTCAAGATGGTCACATTAAGTTGACAGATTTTGGTCTCTCTAAGGTTGGTCTTATCAACAGTACAGATGATTTGTCCGCACCATCCTTTTCCAGTAATGATTTCCTAGGAGATGATGAACCAAAGTCTCAACACTCTTCAAAAAGGGAAGAACGTCGAAAACAATCGGTAGTGGGCACCCCAGATTATTTGGCACCGGAAATACTCCTTGGCATGGGACATGGTGTAACTGCAGATTGGTGGTCTGTGGGTGTCATACTTTATGAGCTTCTTGTGGGTATTCCACCATTCAATGCAGAACATCCGCAGCAAATTTTTGACAACATAATTAACAGAGACATACAATGGCCAAAGATTCCTGAAGAGATCAGCTATGATGCATTTGATTTGATGAATAAATTATTGAACGAAAATCCCGTCCAAAGGTTAGGTGCAACAGGAGCTACAGAAGTTAAACGCCATGCTTTCTTCAAGGATATTAGTTGGGATACTCTAGCAAGGCAGAAGGCTATGTTCATACCATCAGCTGAAGCTCTTGATACAAGTTATTTTATGAGCCGGTACATTTGGAATCCAGAGGATGAACATTGTGTTGGCGGTAGTGATTTTGATGACATTACTGAAACATGCAGCAGTGGTTCAGGAAGCGATTTATTAGATGAAGATGGTGATGAATGTGGTAGCTTAGCAGACTTCCCTGGTCCAGCTCTTGAGGTGCAGTACTCGTTTAGTAATTTCTCATTTAAGAACTTGTCTCAGCTAGCATCTATCAATTATGATCTGGTGATTAGGAACTCCAAGGAATCACCCAATGACTCGAATCCATCTGTATCATGA 3516 0.434 MSSTPQPPRSPQPHSAPGTPSPLASRAKLQKTPHILNRRAADDDDDEDEPEEDKPEHEKEEGVRVRPGSPSILLASALGLNHIRTRYSSSPLRYSSSLGAPPIFPKDAKPRSKPSHSKDLGGKAHWSQSKSLKAHSHLLPEGNHAAFAKEMQSPRFQEILRLTSGRKKRNPDIKSFSVELNSKGVRPFPIWKHRVFGHMEEAMLAIRAKFEKLKEEVDSDLGGFAGDLVGTLEKISGSHSEWKERLEDLLVVARQCAKMSPAEFWIKCESIVQSLDDKRQELPVGVLKQAHTRLLFILTRCTRLVQFQKESGYEQDHILGLHQLSDLGVYPEQIAKSSQQKPPSIPPSGHEMAEKQFRKSHGKEQDKLMTKQSQVDQLASVVNDNVEVPSAESTPSSYRMSSWRKLPSAAEKKRKDQDAADSPSNDHLLVKDENAENLDTLSCHPEHSQSSSRTRKASWGFWGDQQNLSYEDSMICRICEVEIPIVHVEEHSRICTIADRCDLKGLTVNERLERVCETIERILESWTPKSTPKSTDTPGETFEMVRVSTSSVHEEFNELSSERNNLTCRCSEDMLDHTSEADSTFVMDDLNLSSEISCEARICLKPDLGTKVSSAGSLTPRSPLVTPRTSQIEMLLSGRRTLSELESYDQINKLVEIARAIANVNNCDYSALEYMLDRLEDLKYAIQDRKVDALIVETFGRRIEKLLQEKYISLCGQIEDEKVDSSTSNADEESSVEDDTVRSLRASPINTCSKDRTSIEDFEIIKPISRGAFGRVFLARKRATGDLFAIKVLKKKDMIRKNAVQSILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEAMARVYIAEVVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKLTDFGLSKVGLINSTDDLSAPSFSSNDFLGDDEPKSQHSSKREERRKQSVVGTPDYLAPEILLGMGHGVTADWWSVGVILYELLVGIPPFNAEHPQQIFDNIINRDIQWPKIPEEISYDAFDLMNKLLNENPVQRLGATGATEVKRHAFFKDISWDTLARQKAMFIPSAEALDTSYFMSRYIWNPEDEHCVGGSDFDDITETCSSGSGSDLLDEDGDECGSLADFPGPALEVQYSFSNFSFKNLSQLASINYDLVIRNSKESPNDSNPSVS* 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0044 1171 Pfam Protein kinase domain 762 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0044 1171 MobiDBLite consensus disorder prediction 371 403 - -
Lja3g0044 1171 MobiDBLite consensus disorder prediction 1 70 - -
Lja3g0044 1171 Gene3D Phosphorylase Kinase; domain 1 760 1077 - -
Lja3g0044 1171 SMART serkin_6 762 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0044 1171 ProSiteProfiles AGC-kinase C-terminal domain profile. 1051 1151 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lja3g0044 1171 SUPERFAMILY Protein kinase-like (PK-like) 759 1077 IPR011009 -
Lja3g0044 1171 PANTHER SERINE/THREONINE PROTEIN KINASE IRE-RELATED 24 1170 - -
Lja3g0044 1171 MobiDBLite consensus disorder prediction 352 370 - -
Lja3g0044 1171 MobiDBLite consensus disorder prediction 931 950 - -
Lja3g0044 1171 ProSiteProfiles Protein kinase domain profile. 762 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0044 1171 MobiDBLite consensus disorder prediction 1 18 - -
Lja3g0044 1171 MobiDBLite consensus disorder prediction 334 429 - -
Lja3g0044 1171 MobiDBLite consensus disorder prediction 406 429 - -
Lja3g0044 1171 MobiDBLite consensus disorder prediction 923 950 - -
Lja3g0044 1171 MobiDBLite consensus disorder prediction 91 131 - -
Lja3g0044 1171 Gene3D Transferase(Phosphotransferase) domain 1 846 1068 - -
Lja3g0044 1171 ProSitePatterns Serine/Threonine protein kinases active-site signature. 881 893 IPR008271 GO:0004672|GO:0006468
Lja3g0044 1171 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 1170 - -
Lja3g0044 1171 CDD STKc_MAST_like 768 1055 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0044 Lja-Chr3 508954 517373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0044 1 1170 AGC Kinase Gene Family AT5G62310 63.538 0.0 1446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Lja3g0044 Pkinase 4.7e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0044 3 508954 517373 Lja3g0044 3 508954 517373 ECH