Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0035 ATGGTGGTTAACGAGAGACCCTCCAAGAGGATGAAGCGGAGGGTCACCGCCGATCTCTATGATTTCCTCTCCTTTCCCTCCGCCGGCGATGTCTCCCCCGCCGCCGTGCCCTTCCGGAACCGCATTCAGCGCTTCCTCTCCGACCATGCACGCGTCACTTTCCCTCCCTCCCTCTTTCCCGCTCTCATGACGTGGCAAATCTTGTTCCGTGTCGGAGAACTCGTCGATGGCCCTGATCTCTCGCCGGCCATGGTTGCCCTCGACATTGTTGAGGAGGACGTCACCCGTTCCCGTACTTCTGTCTACTGTGACCAGTGCAGAGTCGTTGGGTGGAGTGGTCATCCAGTGTGTCGAAAGCGATACCATTTCATAATTCGGGCTGCAAGTGATGCTGTCGAAGGATATCAAAGACCTTGTTCAAGATGCGGAAGTCTTCTCCAGCTATCTGAACCAAGGTGTAAATCGTGTAACTTTGCCATTACTGCTGATGATCTTGAGGAATGGGTGTATCTTCAAATTGAAGATAACACCCATCTTCTGCATGGTGTTGTCCACGCCAATGGCTATGGTCACCTGCTTACTCTTAATGGAAGAGAAGGTGGCGCGGAGCTTCTCTCTGGAGCTGATATTATGGGTTTCTGGGATAGGCTATGTGCTGCAATTTCTGTCAGGAAGGTGAGCGTGATGGATTTGTCCAAGAAATTTGGACTGGAATATCGATTGCTTCATGCAATCACCAAGGGACATTCCTGGTATGGCAATTGGAATTATGAATTTGGGACTGGCAGCTATGCTCTCACCCATGATACATACAAGAAAGCAGTAAAGACCTTGTCAAGCATGCCCTTGTCCTCATTTATATTCCAGCACCGAGGGCCGCCAAACCGCCTGCAGTGTGTCATTTCTCTTTACCAGTCTCTGGCAGATACTGAACTTTTAACAATTAAAGATCTCTTCTCCTTTTTGTTGGCATTGATTCATGGATTTCGTAAACCCATGGCTGTGAGCACATCTAAACAGCTTGAAGACACCAGTACATGCAATACATTGTGTGCTTGGATGAGAAATGATGTTGAAGATGTGCAACAGGCTTTGATCAAGGTATTGCTTGCATCGGGGGCATATAGTGAGGCCAAATGGGTGACAAGGCGTGCTCTCAAAGGTGCAGTATGCAGGGGGGTTGCATCTCCAGAGCTTTTAGATTACTGTCTCAAGCACTTCCAAGGGAAATTAGCTGCCAATGGAATGGTGGTTTGTTCACGATGCAATCCTGTTTCTAGTGCTATTGAATACAGGCTAGAACTTCTGAGTAATGCATTTATAGCAAATTCAAGCTCTCCCTCAGAAGAGCAAGTGATCTCTGATTTGACATTCTTATTCAATTCAATCATTCACCCTGACAAAATGGTGAGCTACAGGCCTAAGGATTTGAGGAAAAGGGTGACTGATTCAGCCAGGACGCTCCTTGACTGTAAGCAGTTTATGAAGGATTACAAGCTTGATCAGATGACTGAAGAACTGCCTTCAGTCATTAGGCTGTGGTGTCATGTGGAGCTTTCTGATCAGCCTAAAGATGACCCATCCCCACCTCTAGAGCTGATTGTGTTGCCTTTGAATGCTACTGTTGCTGACCTCAAGAACGAAGTCACCAGTGCTTTCCAAGAGGTTTATGCAATGTATAAAAGGTTTCAAGCCGAGGAGCTCCTGGGATATGGGTCAGTAAGTGATTCCCTCACAGTAAAATTCCTGTTTGGAACAAGTGGGTCAGTCCAAATTCGAGGTAGATGCCCAGCTAAACATGGGCTAAGCCGATTCCGAATGGAACGTGGAACAGAAGTGTGGAAAGTTGATTGCACTTGCGGGGCAAAGGATGATGATGGAGAAAGAATGCTAGAATGTGATACTTGTGGTGTTTGGCTGCATACTAGATGCGCGGGTGTTGATAATTCTAATGGCATGCCTTCCAAGTTTGTATGTATAAGATGTGTGATCTCATACCGTGAGGAAACTGAAAAGATGCCAGAGTCTGGTGGCAAGGCTGATGAGGCTTGTAAATTGAACATATATTGCAGAGATGAAGCAGTGGGAACAGATTGTGCAGCAGTTTCCTGCAACATAGCTGTGAATTTTGGTGTGCGTTGA 2142 0.4692 MVVNERPSKRMKRRVTADLYDFLSFPSAGDVSPAAVPFRNRIQRFLSDHARVTFPPSLFPALMTWQILFRVGELVDGPDLSPAMVALDIVEEDVTRSRTSVYCDQCRVVGWSGHPVCRKRYHFIIRAASDAVEGYQRPCSRCGSLLQLSEPRCKSCNFAITADDLEEWVYLQIEDNTHLLHGVVHANGYGHLLTLNGREGGAELLSGADIMGFWDRLCAAISVRKVSVMDLSKKFGLEYRLLHAITKGHSWYGNWNYEFGTGSYALTHDTYKKAVKTLSSMPLSSFIFQHRGPPNRLQCVISLYQSLADTELLTIKDLFSFLLALIHGFRKPMAVSTSKQLEDTSTCNTLCAWMRNDVEDVQQALIKVLLASGAYSEAKWVTRRALKGAVCRGVASPELLDYCLKHFQGKLAANGMVVCSRCNPVSSAIEYRLELLSNAFIANSSSPSEEQVISDLTFLFNSIIHPDKMVSYRPKDLRKRVTDSARTLLDCKQFMKDYKLDQMTEELPSVIRLWCHVELSDQPKDDPSPPLELIVLPLNATVADLKNEVTSAFQEVYAMYKRFQAEELLGYGSVSDSLTVKFLFGTSGSVQIRGRCPAKHGLSRFRMERGTEVWKVDCTCGAKDDDGERMLECDTCGVWLHTRCAGVDNSNGMPSKFVCIRCVISYREETEKMPESGGKADEACKLNIYCRDEAVGTDCAAVSCNIAVNFGVR* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0035 713 ProSitePatterns Uncharacterized protein family UPF0054 signature. 181 191 IPR020549 -
Lja3g0035 713 SUPERFAMILY FYVE/PHD zinc finger 607 665 IPR011011 -
Lja3g0035 713 Pfam PHD-finger 618 663 IPR019787 -
Lja3g0035 713 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 686 - -
Lja3g0035 713 SMART PHD_3 617 663 IPR001965 -
Lja3g0035 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 603 666 IPR013083 -
Lja3g0035 713 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 686 - -
Lja3g0035 713 CDD PHD_MMD1_like 617 662 - -
Lja3g0035 713 ProSitePatterns Zinc finger PHD-type signature. 618 662 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0035 Lja-Chr3 418375 421746 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0035 7 662 PHD Transcription Factor Family AT5G22260 28.736 1.22e-83 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja3g0035 PHD 9.4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0035 - - gmx:100780558 1186.79