Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0033 ATGTCCATCACAGAAACAGAGGAAGCCCATTCTCATTCTCAAGCTGGAGAAGCAGAAAACAGTGCAGTTGCATCGACGAAGCTGAAGAGTGAGTCCAGAATGTTCCGCGGGGTGCGCAAACGCAGCTGGGGACGCTATGTTTCCGAGATAAGACTGCCGGGTCAGAAAACCAGGATATGGCTCGGCTCATTCGCTTCGCCGGAAATGGCCGCTCGGGCATACGACTCCGCCGCCTTCTTCTTGAAAGGAGCCTCCGCCTACCTCAATTTCCCCGAACTGGTTCACTCTCTGCCTCGCCCTCTCTCCTCATCCCGGAGAGACATTCAATCCGCCGCCGCTAAAGCTGCCGCTCTCCGCCTCCCCTGTTCTTCTTCGAAAACAGAGCATCACGATTCCATGGAGAAGAAGACGGAAGAGTGTTGGTGGGAGGAGTTGGGACAACATGATCCCACGACGTCGTCGTTTCATGATGCTCCTCTTATGAGCCCTCTCTCCACCTTTGGAGATTTCACATGGAATGATTTAGTGTTTAATTTCAATGATGAGTATGATGGCATTCTCACATCAACTCTTTTTTAG 579 0.5181 MSITETEEAHSHSQAGEAENSAVASTKLKSESRMFRGVRKRSWGRYVSEIRLPGQKTRIWLGSFASPEMAARAYDSAAFFLKGASAYLNFPELVHSLPRPLSSSRRDIQSAAAKAAALRLPCSSSKTEHHDSMEKKTEECWWEELGQHDPTTSSFHDAPLMSPLSTFGDFTWNDLVFNFNDEYDGILTSTLF* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0033 192 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
Lja3g0033 192 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Lja3g0033 192 MobiDBLite consensus disorder prediction 1 26 - -
Lja3g0033 192 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Lja3g0033 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 145 - -
Lja3g0033 192 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Lja3g0033 192 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Lja3g0033 192 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Lja3g0033 192 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
Lja3g0033 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF036-LIKE 13 145 - -
Lja3g0033 192 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0033 Lja-Chr3 406944 407813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0033 4 118 AP2-EREBP Transcription Factor Family AT5G25810 55.652 3.65e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja3g0033 AP2 4.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0033 K09286 - gmx:100783790 171.4