Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0031 ATGACTCCAGTGAACTTGGCGGGGCAGTTTGGTGACACGACATACACGAAGGTGTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAAAGAGACCATGAAGAAATATTTCGAGCAATTTGGTGACATCTTGGAAGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTGACTTTTCGTGAACCAGAAGCTGCTATGAGAGCTTGTGTGGATGCTGCTCCTGTAATTGACGGAAGGAGAGCTAACTGCAACCTTGCTTCCTTGGGTGTCCAGAGATCTAAGCCTTCAACTCCAAAGCAGCATGGAGGAGCAGGAAGGAACTTTAGGGTAATGAGTTCTTTCCAGACAGGAGGAGGAGGAGGATTTGGAGGTGTGGGATCAGCTTTTGCTTCAGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATACTAATGTTTATGGGTACTCTTCTTACTCGCCGGATTACACATACCCTACGAGCTACTACAATGTGTACGGAGGAGCTGCGGCAGCACAGTACCCAGTTTATGGAAGCGGACCTGCTGGAGGCATGATGACGGCTGCTGCTGCAGCATTCTATCCATATCTCCAGTACGGAGGAGCAGAAGGGACCGCCACCGCTGCTACTACCGGCGGCTACACTTCTGGGCAAGGCTATGGTGCTGTCAACTACCCACCTCACATGTTTCAGTATTCTCCCATTGCCTCAACTGGTGGCTACGCACAACACTATGGAACACCCATCTCTCTTGCTCCTTCGCCTGCATTGCAATCAGGCGTGAGCATGGCTCTTCAAGCTCCGATTCCTCATCGCTAG 843 0.5042 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKQHGGAGRNFRVMSSFQTGGGGGFGGVGSAFASAATFPHYAIQQGIPYTNVYGYSSYSPDYTYPTSYYNVYGGAAAAQYPVYGSGPAGGMMTAAAAAFYPYLQYGGAEGTATAATTGGYTSGQGYGAVNYPPHMFQYSPIASTGGYAQHYGTPISLAPSPALQSGVSMALQAPIPHR* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0031 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Lja3g0031 280 SUPERFAMILY RNA-binding domain, RBD 12 115 IPR035979 GO:0003676
Lja3g0031 280 PANTHER OS01G0876800 PROTEIN 1 275 - -
Lja3g0031 280 Gene3D - 11 135 IPR012677 -
Lja3g0031 280 PANTHER BOULE-RELATED 1 275 IPR037366 GO:0003729
Lja3g0031 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Lja3g0031 280 CDD RRM_RBM24_RBM38_like 16 91 - -
Lja3g0031 280 SMART rrm1_1 17 89 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0031 Lja-Chr3 386843 392584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0031 12 92 C2H2 Transcription Factor Family AT2G19380 41.975 1.69e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0031 - - adu:107477578 434.876