Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0029 ATGGCACACTCTTCCTGGCTCTTTGCAATACTGTTACTACTAACAGCACACCCTATTTTCCCGCCATGTGTGTCTCTCAAGTTAGAAACCCAAGCTCTTGTACACTTCAAGAACCATTTGATGGATCCCTTGAATTATTTGGGTTCATGGAATCAATCAGACTCCCCATGTGAGTTTTATGGAATTACATGTGATCCAGCTGCTTCTGGGAAAGTCACAGAAATCTCATTGGACAATAAGTCCCTCTCTGGTGATATTTTTCCATCACTCTCAGTTCTGAAGAGCCTGCAAGTTCTGTCACTGCCATCCAATTTACTTTCTGGAAAGCTTCCACCACAAATGAGTGCCCTTACCAGCCTCAGAGTCTTGAACCTTACAGGAAATCAGCTGGTTGGACCAATCCCAAACTTGTCTTTGCTCAGAAACCTGCAGGTTCTTGATCTTTCAGCAAACTACTTTTGTGGCAGAATTCCCAGTTGGGTTGGGAGTCTAACTGGACTTGTTTCACTGGGTCTTGGGGAAAATGAATATAGTGAGGGAGAGATTCCAGAGACTCTTGGAAACCTGAAGAACTTGACCTGGCTCTATCTTGGTGGTTCTCATTTGTTAGGAGAGATTCCAGAATCAATGTATGAAATGAAGGCATTGGAAACATTGGATATTTCAAGGAATAAGATCTCTGGGAAACTCTCCAGATCAATTTCCAAGTTGAAAAATCTTTACAAGATTGAACTCTTCTCAAACAACTTGACAGGAGAAATCCCAGCTGAGCTTGCAAACCTCACCAACCTACAGGAGATTGATCTCTCTGCAAACAAAATGCATGGTAGGTTGCCAGAGGAAATTGGTAACATGAAGAATTTGGTTGTTTTTCAACTATATAGTAACAACTTTTCTGGAGAACTTCCTGCTGGATTTGGGGATATGCAGCATCTTATTGGCTTCTCAGTTTATCAAAACAACTTCACTGGGATGATTCCTGGAAACTTTGGCCGGTTTTCGCCACTTGAAAGTATTGACATATCTGAGAATCAATTTTCAGGTGATTTCCCAAAGTTCTTGTGTGAAAGCAAAAAGTTGAGACTTTTGCTTGCATTGCAAAACAATTTTTCTGGGAATTTTCCGGAGGCTTATGTTACATGCAAATCTCTAGAGAGATTCAGGATTAGTAGAAACCACTTATCTGGGAAAATACCAGACGGGGTTTGGGGACTTCCATATGTGAAAATAATTGATTTAGCTTATAATGATTTCACTGGCGAGGTGTCTCCAGAAATTGGGGTTTCTATTAGCTTAAGTGAGATGGTTTTGATAAACAACAGGTTTTCAGGTAAGCTCCCATCAGAATTTGGCAAGCTAGTGAACCTGGAGAAGCTTGACTTGAGTAACAACAATTTCTCTGGTGAAATACCACCTGAAATGGGATCTCTGAAGCAGTTATCCTCTTTGCATCTGGAAGAGAATTCATTAACGGGATCAATACCTGCAGAACTGAGTCATTGTGCAAGGCTGGTGGACTTGAATCTTGCTTGGAATTTTTTATCTGGGAATATTCCCACTTCAGTTTCACTCATGAGGTCACTGAACTCTCTTAATATATCTGGAAACAAACTTACAGGTTCTATACCAGATAATTTAGAAACAATGAAACTAAGCTCAGTGGACTTTTCTGAAAACCTGCTTTCTGGGAGAATTCCATCTGGTTTTTTTATTATTGGTGGAGAGAAAGCATTTCTTGGAAACAAGGGACTGTGTGTTGAGGAAAGCATAAATCCTTCAATGAATTCTAGTTTAAAGATCTGTGCTAAAAGTCATGGTCAGACAAGGGTCTTTGCTTATAAATTTCTCTTGCTCTTTCTCATTGCTTCGATCTGTGTTTTTATTTTAGCCGGGCTGCTGCTTTTTAGTTGTAGAAGCCTCAAGCATGATGCAGAGAGAAACTTACAATGTCAAAAAGAAGCATGTCTAAAATGGAAACTTGCATCTTTCCACCAAGTAGATATTGATGCTGATGAAATATGTAATTTGGATGAAGGTAATTTAATAGGCAGTGGTGGTACAGGAAAGGTTTATCGAGTGGAGTTGAGGAAAAATGGTGCCATGGTGGCTGTAAAGCAGCTAGAGAAAGTAGATGGTGTGAAGATTTTAGATGCAGAGATGGAGATTTTGGGGAAAATTAGGCATAGAAATATACTTAAACTTTATGCTTGTTTTCTTAAAGGAGGATCCAATCTTTTAGTGCTTGAGTACATGCCAAATGGTAATCTTTTTCAAGCTCTGCACAGACAGATAAAAGATGGGAAGCCAGGATTGGATTGGAACCAGAGGTATAAAATTGCTTTGGGAGCTGCAAAAGGAATTGCATATTTACACCATGATTGTTCTCCACCTATTATTCACAGGGATATAAAATCCAGCAACATTTTGCTTGATGAGGACTATGAGCCCAAAATAGCTGATTTTGGTATTGCAAGGTTTGCAGAAAAATCTGATAAGCAATCTAGTTGTCTGGCAGGCACACATGGTTACATTGCTCCAGAACTAGCTTATACAATTGACATTACTGAAAAGAGTGATGTCTATAGCTTCGGAGTGGTGCTATTAGAATTAGTCTCTGGCAGAAAACCCATTGAAGAGGAATATGGAGAAGCTAAGGATATTGTTTATTGGGTTTTGACTCATCTGAATGACCATGAAAGCATTCTTAACATCCTTGATGACAGAGTAGCATTGGAGTGTGGTGAAGATATGATAAAGGTCTTGAAGATTGCTATCAAGTGCACCACTAAGCTTCCATCTTTACGCCCTACCATGAGAGAGGTTATCAACATGCTGATTGGTGCTGAACCTTGCACATTGAAATCTTCAGACTGCGATCTTTACAAGCATGCAAATGAAAAGGCTTTTTTTTAG 2913 0.3958 MAHSSWLFAILLLLTAHPIFPPCVSLKLETQALVHFKNHLMDPLNYLGSWNQSDSPCEFYGITCDPAASGKVTEISLDNKSLSGDIFPSLSVLKSLQVLSLPSNLLSGKLPPQMSALTSLRVLNLTGNQLVGPIPNLSLLRNLQVLDLSANYFCGRIPSWVGSLTGLVSLGLGENEYSEGEIPETLGNLKNLTWLYLGGSHLLGEIPESMYEMKALETLDISRNKISGKLSRSISKLKNLYKIELFSNNLTGEIPAELANLTNLQEIDLSANKMHGRLPEEIGNMKNLVVFQLYSNNFSGELPAGFGDMQHLIGFSVYQNNFTGMIPGNFGRFSPLESIDISENQFSGDFPKFLCESKKLRLLLALQNNFSGNFPEAYVTCKSLERFRISRNHLSGKIPDGVWGLPYVKIIDLAYNDFTGEVSPEIGVSISLSEMVLINNRFSGKLPSEFGKLVNLEKLDLSNNNFSGEIPPEMGSLKQLSSLHLEENSLTGSIPAELSHCARLVDLNLAWNFLSGNIPTSVSLMRSLNSLNISGNKLTGSIPDNLETMKLSSVDFSENLLSGRIPSGFFIIGGEKAFLGNKGLCVEESINPSMNSSLKICAKSHGQTRVFAYKFLLLFLIASICVFILAGLLLFSCRSLKHDAERNLQCQKEACLKWKLASFHQVDIDADEICNLDEGNLIGSGGTGKVYRVELRKNGAMVAVKQLEKVDGVKILDAEMEILGKIRHRNILKLYACFLKGGSNLLVLEYMPNGNLFQALHRQIKDGKPGLDWNQRYKIALGAAKGIAYLHHDCSPPIIHRDIKSSNILLDEDYEPKIADFGIARFAEKSDKQSSCLAGTHGYIAPELAYTIDITEKSDVYSFGVVLLELVSGRKPIEEEYGEAKDIVYWVLTHLNDHESILNILDDRVALECGEDMIKVLKIAIKCTTKLPSLRPTMREVINMLIGAEPCTLKSSDCDLYKHANEKAFF* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0029 970 ProSiteProfiles Leucine-rich repeat profile. 455 477 IPR001611 GO:0005515
Lja3g0029 970 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR2 7 958 - -
Lja3g0029 970 ProSiteProfiles Leucine-rich repeat profile. 119 141 IPR001611 GO:0005515
Lja3g0029 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672|GO:0006468
Lja3g0029 970 Gene3D Ribonuclease Inhibitor 331 470 IPR032675 -
Lja3g0029 970 SUPERFAMILY RNI-like 243 567 - -
Lja3g0029 970 CDD STKc_IRAK 682 945 - -
Lja3g0029 970 Pfam Protein kinase domain 679 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0029 970 SUPERFAMILY L domain-like 55 304 - -
Lja3g0029 970 Gene3D Transferase(Phosphotransferase) domain 1 751 960 - -
Lja3g0029 970 Gene3D Ribonuclease Inhibitor 179 330 IPR032675 -
Lja3g0029 970 Gene3D Ribonuclease Inhibitor 25 178 IPR032675 -
Lja3g0029 970 ProSitePatterns Protein kinases ATP-binding region signature. 682 705 IPR017441 GO:0005524
Lja3g0029 970 ProSiteProfiles Protein kinase domain profile. 676 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0029 970 Pfam Leucine Rich Repeat 216 237 IPR001611 GO:0005515
Lja3g0029 970 SMART serkin_6 676 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0029 970 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 958 - -
Lja3g0029 970 Gene3D Phosphorylase Kinase; domain 1 638 750 - -
Lja3g0029 970 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Lja3g0029 970 SMART LRR_typ_2 453 476 IPR003591 -
Lja3g0029 970 SMART LRR_typ_2 140 164 IPR003591 -
Lja3g0029 970 SMART LRR_typ_2 525 549 IPR003591 -
Lja3g0029 970 SMART LRR_typ_2 213 237 IPR003591 -
Lja3g0029 970 SMART LRR_typ_2 93 117 IPR003591 -
Lja3g0029 970 SMART LRR_typ_2 261 285 IPR003591 -
Lja3g0029 970 SMART LRR_typ_2 477 501 IPR003591 -
Lja3g0029 970 Pfam Leucine rich repeat 455 512 IPR001611 GO:0005515
Lja3g0029 970 Gene3D Ribonuclease Inhibitor 471 592 IPR032675 -
Lja3g0029 970 SUPERFAMILY Protein kinase-like (PK-like) 673 945 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0029 Lja-Chr3 376484 380976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0029 19 957 Receptor kinase-like Gene Family AT1G72180 56.586 0.0 1037
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja3g0029 Pkinase 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0029 - - gmx:100789704 1579.3