Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0028 ATGGCTTTTCTCCTTAACTCCTCCTTCTGCTACCTCTTTATTTCCTTGTGTTTCCTTTCTTCTCTTCCAATCATAAATACACTCTCAACTGTTTCCATATCTGAAACTTCCAACCAAATATTTATTTGTGCCTTACAACAGCCAAACCAACAAGGACAATCCAATCTTAACTGTACTAGCTTTCCTCCTGGTATTGGTCTTCAAGTGAATCCCAACGTTTCCTACTCTCAGATTGTGGGTGGCAATGGGTTTCTATGTGCATCAAGGCCTTCTTCTTCTTCTTCTTCAACTTCCATCATGGGGTGTTGGAGATTCTCTGCCAATGCTTCTAATGTTCCCTTCAAGCGTATCTACCATGGGCCTGTGATTGAAGACATTGATAGTGGGAATTCCCACGTTTGTGGTCTTGTAAGAGGCCTTGGCCTTGAGTGTTGGCAATGGCCTGGCTTCAACTCAACTTCAAGCATGAGCAGAAACATGTCAAGAATTGCAGTGGGAGAGAATTTTGTATGTGGCTTATCAGAGACAGGGAGTGTCACTTGCATGGGGAGTAACACTAACGTTGTTGGGCATGAACCTGTGCCTGGTAGAAATTACTCTCTACTTGCAGCTGGGTTCAGGCATGCCTGTGCTATCTCTGGTGATGGTAGCTTGGATTGTTGGGGAGACATGGAGGGCCAGAAACCACAAGGGAGGTTCATTTCTTTGGCTTTGGGAGAGAATCGAAGTTGTGCACTTGGGTATGATGGACTAGTTTCTTGTTGGGGTTCGAATAATTTCAGCATGCCTCAGAGATTAAAAGGGACATTTTTTGACGCAATTGTAGCAAAGCGAAGTGTTTTCTGTGGAGTTGTCACTTCTAATTATTCATTGATTTGTTGGGGTTCTGAAATTTTTGAGTCAAATACCAAGGTGTTTGTTAATGTTCTCCCAGGACCTTGCAGGAATCAATGTCCATGTGGACCCTTGTCAGATTCTGCCAAACTCTGTGACCCGCCTGCCATCATTTGCAAGCCCTGTCAGCCAGCAGTTGAATCTTCATTTCCATTAGAGCCGCCACAATCACCATGGACACCTCCACCTCTGCCAACCGAACCTTCAGCTGAAAGTGGTTGGAGCAGCAAAATGGTGGCATTTCTGGTTATTGGTTGTGTTGGTTGCAGTGCCTTGTTGCTTGCCTTGGTATTCATCATTCACAGGTACTGCAAAGGCAAAGTGTGCAGAGTGCATGACTCTGGCCGATTGGATGACCCTCCAGAAGCTCCAGCAGCTGTTCCTGCTGTTTTGGAGAAGAGGTTGAGCCATGTAATTAGCATGGGTAATGGGGGAACCCATTTGGAGGAGTTTTCAATGCAAGTACTGCTTCAAGCCACCAACAATTTCTCTGAAGAGAACAAAATTGGGAGTGGGAGCTTTGGTTTTGTGTACCACGCCACACTGGAAGATGGGAAGGAAGTTGCTGTGAAAAGAGCTGAGATCACACCACAAGCATCTCCATCTAATGCAGTCTTGGGTGGTGGCACCAAAAGGCAAGAAGACAAAGACAATGCCTTTGTGAATGAGCTTGAATCTCTTTCAAGACTCCACCACAAGAACCTCGTCCGGTTACTAGGTTTTTATGAAGACAACAGTGAGAGGATCTTAGTGTATGAGTACATGAGTAATGGCAGCCTAAATGACCACCTCCACAAGCTCCAAACTTCTTCTCTCATCATGTCATGGGGTGGTCGCATCAAGGTAGCTTTGGACGCAGCAAGGGGTGTAGAGTATCTACACCAGTATGCTACTCCACCAATCATTCACCGTGACATCAAGTCTTCTAACATATTATTGGATGCAAAGTGGACAGGCAAAGTCTCTGATTTTGGACTATCACTCATGGGTCCTGATTCTGAAGATGAGGAATCACACCTTTCACTTCTTGCAGCTGGCACTGTTGGCTACATGGACCCTGAATACTACAGGCTTCACCATTTGACCACAAAAAGTGATGTCTACAGCTTTGGTGTGGTTTTGCTAGAACTTTTATCAGGCCTCAGAGCCATCCATAGAAATGAGAATGGAGTGCCAAGAAATGTGGTAGATTTCATGGTACCCTTCATTCTTCAAGATGAAATTCACAGGGTTTTGGACCCGAGAGTACCACCCCCAACACCATTTCAGATAGAGGCCGTGGCATTTGTAGGTTATTTGGCATCGGATTGTGTTCGTCTAGAAGGTCGAGATAGGCCAACCATGACTCATATTGTCAATAGTTTGGAAACAGCACTGGCTGCTTGTTTAGCACAACCTACACTGTCAAGGTCATCCACTGATTCTTCCGACGAATTTCCTTTTCCCTTACGCCGTGAGCTTCCAACACGGGAATTTTGA 2373 0.4526 MAFLLNSSFCYLFISLCFLSSLPIINTLSTVSISETSNQIFICALQQPNQQGQSNLNCTSFPPGIGLQVNPNVSYSQIVGGNGFLCASRPSSSSSSTSIMGCWRFSANASNVPFKRIYHGPVIEDIDSGNSHVCGLVRGLGLECWQWPGFNSTSSMSRNMSRIAVGENFVCGLSETGSVTCMGSNTNVVGHEPVPGRNYSLLAAGFRHACAISGDGSLDCWGDMEGQKPQGRFISLALGENRSCALGYDGLVSCWGSNNFSMPQRLKGTFFDAIVAKRSVFCGVVTSNYSLICWGSEIFESNTKVFVNVLPGPCRNQCPCGPLSDSAKLCDPPAIICKPCQPAVESSFPLEPPQSPWTPPPLPTEPSAESGWSSKMVAFLVIGCVGCSALLLALVFIIHRYCKGKVCRVHDSGRLDDPPEAPAAVPAVLEKRLSHVISMGNGGTHLEEFSMQVLLQATNNFSEENKIGSGSFGFVYHATLEDGKEVAVKRAEITPQASPSNAVLGGGTKRQEDKDNAFVNELESLSRLHHKNLVRLLGFYEDNSERILVYEYMSNGSLNDHLHKLQTSSLIMSWGGRIKVALDAARGVEYLHQYATPPIIHRDIKSSNILLDAKWTGKVSDFGLSLMGPDSEDEESHLSLLAAGTVGYMDPEYYRLHHLTTKSDVYSFGVVLLELLSGLRAIHRNENGVPRNVVDFMVPFILQDEIHRVLDPRVPPPTPFQIEAVAFVGYLASDCVRLEGRDRPTMTHIVNSLETALAACLAQPTLSRSSTDSSDEFPFPLRRELPTREF* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0028 790 PANTHER OJ000114_01.11 PROTEIN 23 765 - -
Lja3g0028 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 599 611 IPR008271 GO:0004672|GO:0006468
Lja3g0028 790 CDD STKc_IRAK 467 754 - -
Lja3g0028 790 Pfam Regulator of chromosome condensation (RCC1) repeat 202 223 - -
Lja3g0028 790 ProSitePatterns Protein kinases ATP-binding region signature. 467 489 IPR017441 GO:0005524
Lja3g0028 790 ProSiteProfiles Protein kinase domain profile. 461 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0028 790 Gene3D Transferase(Phosphotransferase) domain 1 553 767 - -
Lja3g0028 790 Gene3D - 49 309 IPR009091 -
Lja3g0028 790 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 23 765 IPR044815 GO:0004674
Lja3g0028 790 Gene3D Phosphorylase Kinase; domain 1 437 552 - -
Lja3g0028 790 SUPERFAMILY Protein kinase-like (PK-like) 441 754 IPR011009 -
Lja3g0028 790 SUPERFAMILY RCC1/BLIP-II 114 298 IPR009091 -
Lja3g0028 790 Pfam Protein kinase domain 462 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0028 790 SMART serkin_6 461 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0028 Lja-Chr3 373265 375999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0028 27 771 Receptor kinase-like Gene Family AT5G47850 51.373 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Lja3g0028 Pkinase 6.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0028 - - pvu:PHAVU_011G003100g 1074.31