Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0026 ATGGCCCAGCAGTCATCTAGGCTTCAGCGCTTGCTTACTCTCTTGGACACTGGGTCAACCCAAGCAACAAGGTTGACTGCTGCTCGTCAGATAGGGGATATTGCAAAATCACACCCTCAAGACTTATCCAGTCTTCTTAAGAAGGTTTCTCAATATTTGCGGAGTAAAAATTGGGATACAAGAGTTGCAGCTGCCCATGCAATTGGGTCTATTGCTGAGAATGTTAAACACATAAGCCTGAATGAACTTATTACTTCTGTCGTGTCAAAAATATCGGAGTATGGGAAATCTTGTAGCGTCGAGGATCTGTGCGCATGGCCGTATTTACAATCAAAAATTTCAGGAAGCTCATTTAGAAGCTTTGATATGAACAAGGTGCTTGAATTTGGAGCTTTATTAGCATCTGGTGGACAGGAATATGATATTGGAAATGATAATTCAAAGAACCCGAAGGAGCGATTGGTTCGCCAGAAGCAAAATCTTCGACGTCGATTAGGTTTGGATGTCTGCGAACAATTTATGGATATCAATGATGTAATAAGAGATGAAGATCTTATGGCACCGAAATTTGAATCACAGATCAATGGAATAGATCATAGAGTTTTTACATCTTGTTCTGTACATAATATCCAGAAAATGGTTGCAAAAATGGTTCCTAGTGTTAAGTCTAAGTGGCCAAGTGCAAGAGAACTGAATCTTTTGAAGCGCAAAGCAAAAATAAACTCAAAAGACCAAACTAAAAGCTGGTGTGAAGATGGAAGTACAGAGGCATCAGGTGCTCAAAATTTGACTTCAAAAGGCATATGTGCGGATACAGTAAATTATGGCAAGGCATTCGTGGATGCTAATCATGATGATGACGGCTTGGATCATGATGGGGATGGACAATGGCCTTTCAATACTTTTGTTGAACAACTTATTATAGATATGTTTGATCCTGTTTGGGAGATACGGCATGGTAGTGTGATGGCATTGAGAGAGATTTTAACACATCAAGGTGCTTCTGCTGGAGTATTTAAACATGATTCACGGTTCGGTGGGACCTTGTTTGTTGAATTAGAGGACAAAAGTATACCAAAAATATTGAAGAGAGAGAGGGAAATTGATTTGAATATGCAAGTTTCAGCGGATGAGTCTGTATCAAACTTGAAGAAGCCAAAACTTGAAGATTTATCATCATCAACTTCTTTGGATAGTGTGATGACTAGCAGCAATGAAGGTGATATTGAAATCAGCATTTGTTCTGAAACCCATGGAAGCGATATACCTTTGGACAATGTGAATGGGAAATTTAATGGTAATTCTGTTGCCATGGATCTGGAATCTCCCTCTGACTCTTTACATGATGCATACAACGAATCTGCTAATTTAGCAGAGCAGAAGGGTTATTCTGATGACAGTAATATTCCTTCTGGAAACCCTAATGTGCTGAGAAATCTTCCTCAGAATTGTGAGCTGATGAACCTGGTTAAAGTGGCTAGGAGTTCCTGGCTTCGAAATTGTGAATTTCTTCAAGATTGCGTGATACGCTTTTTGTGTGTTTTGTCACTTGATCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCTCCTGTGCGTGAAACCTGTGCACAGGCATTAGGTGCTACGTTTAAGTATATGCATCCAGCACTAGTAAATGAAACACTGAACATATTATTGAAAATGCAGTGTAGGCCAGAATGGGAGATTCGTCATGGCAGTCTTCTTGGTATCAAATATTTGGTTGCTGTGAGGCAGGAGATGCTTTCTGATTTGCTTGGACGTGTTCTTCCTGCATGTAAATCTGGGCTGGAGGACCCAGATGATGATGTTCGAGCAGTTGCTGCTGATGCTTTAGTCCCAGCTGCAGCTGCAGTTGTTGCTTTACAGGGTCAAACATTGCATTCAATTGTGATGCTGTTGTGGGATATATTGCTTGATTTGGATGATTTAAGTCCATCCACCAGCAGTGTGATGAATCTTCTGGCAGAAATTTATTCTCAAGAAGAGATGATCCCTAAGATGTATAAAGTTTTTAAATTGGGAGACAATGAAATAGAAAACGCAGATGGTGGTTGTGGTGATGATGACGGAGAAGAAAATCCTTATGTGCTTTCAACTTTGGCACCGCGCTTGTGGCCTTTTATGAGGCATAGCATCACATCTGTCCGTTATTCAGCAATACGGACTCTGGAGAGGCTACTTGAAGCTGGATATAAGAGAAACATGTCTGAGCCATCTAGTGCTTCATTTTGGCCCTCTTCTATATTTGGAGATACCCTTCAAATCGTCTTCCAGAATCAGCTATTGGAAACAAATGAGGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTGTGGAGGACTTGGAGGCAGCTGCGAGGTCTTACATGTCTTCTTGGATTGAACTTGCATCTACACCATTTGGTTCAGCTTTAGATTCCTCAAAGATGTATTGGCCTGTGGCCTTCCCAAGAAAAAGTCAACTTAGAGCAGCAGCTAAAATGAGAGCTGTGAAAATTGGAAATGAATATGGTGGCGATCCTGGCCTTGATTCGACAAAATTAACTATTCTACAAGATAAAAATAGAGATGTTGCTTTGAATTCTGTTAAGATAGTTGTTGGTGCTGATATGGACACTTCTGTAACTCATACTCGGGTAGTTACAGCAACTGCTTTGGGAATTTTTGCTTCCAAGTTACCTGAGGGTTCTCTAAAGTATGTGATTGATCCACTGTGGAGCTCTCTAACCTCTTTGTCTGGTGTCCAACGGCAGGTTGCATCCATGATACTTATTTCTTGGTTCAAGGAGATTAAGAACATGAGTTTGTCTAAAATCCCTGATGGTATTCCAGCTGCCCTCAGAGATTGGTTGCTGGACTTATTAGCTTGCTCTGATCCAGCTTTCCCCACTAAAGGTTCACATCTTCCTTATGCTGAGCTTTCAAGAACTTATTCAAAGATGCGTGGTGAGGCTGGTCAATTGCTTAATGCTGTCAAGTCTTCTGGTATGTTTAATGAGTTATTGGAAACTACCAAAATTGAGTTGGATAGCGTAAGTGTGGATGATGCTATTGGTTTTGCATCAAAGATTCCAGCATTTTGTAATGATAGTTCTACAAACGAATCATTGGGAAAGAACACAATGGATGATATTGAATCCTCAAAACAGAGGCTCTTGACAACTGCTAGCTATTTGAAATGTGTACAGAGTAATCTGCATGTTACAGTCACATCTGCTGTTGCTGCAGCTGTTGTTTGGATGGCTCAATTTCCTACACGACTCACCCCTATCATTTTGCCTTTGATGGCTTCAGTCAAACGAGAGCAGGAGGAAATAATTCAAGTGAAGTCAGCTGAGGCCCTTGCTGAGCTAATGTATCACTGTGTTACTCGTAGACCTTGCCCCAATGATAAATTAATTAAAAATATATGTAGTTTAACTTGCATGGATCCCTCTGAGACTCCTCAAGCTAAATCCATCTGTTCCATTGAGAGTATTGATGACCAAGGTTTGCTATCGTTTAAAACTCCCGTGAGCAAACAGAAGTCTAAGGTCCATGTTCTAGCTGGTGAAGATCGATCGAAGGTCGAGGGATTTATAAGTAGACGTGGATCTGAGCTATCCTTGAGGCTTCTATGTGAGAAGTTTGGTGCTTTGTTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAGGTTCTTAAGCCAAGCTCCTCTGAGTCCCTACTTGCCACTAATGAAAAGCAAGTTACTGCTGCTATTGAGTCTATCTGTGATCCTCAAACCTTGATTAACAATATCCAGGTGGTGCGGTCTGTTGCTCCCATGTTAAATGAGGAGTTGAAACCAAAACTTTTGACACTTCTCCCATGTATTTTCAAATGTGTTCAGCATTCACATGTTGCAGTTAGATTAGCTGCTTCACGCTGCATTACTTCAATGGCCCACTCAATGAAAGTGAAAGTTATGGGAGCTGTGGTTGAAAATGCTATCCCTATGTTGGAAGATGCATCATCAGTTCATGCTCGGCAAGGAGCTGGCATGTTGATTAATTTTCTTGTTCAGGGTCTGGGTGTAGAGTTAGTCCCTTATGCTCCTCTATTGGTGGTTCCACTTCTAAGATGCATGAGTGATTGTGATCAGTCTGTCAGAAAGAGTGTGACCCATAGTTTTGCTGCTCTTGTACCTTTACTTCCTTTAGCGCGAGGTCTTCCCCAACCAATTGGATTAGGGGAAGGTGTATCTAGAAATGCAGAAGACTTACATTTTCTGGAGCAACTCCTTGACAACTCTCATATTGAAGATTATGAGTTGTGCACTGAATTGAAAGTAACATTGAGAAGATATCAACAGGAAGGCATAAATTGGTTAGCTTTTCTAAAGCGTTTCAAGCTTCATGGAATTTTATGTGATGATATGGGGCTTGGAAAAACACTTCAAGCATCAGCCATTGTAGCCTCTGATATAGCAGAGCATCGAACTCCAATTGGGAATGATGATCTTCTGCCATCTTTAATTATTTGCCCATCAACACTAGTTGGGCACTGGGCCTTTGAGATAGAGAAGTATATTGATGTTTCAGTGATATCTAGTCTTCAGTATGTTGGTTCTGCTCCTGACCGAATGCTTCTCCGTGATAATTTTTGCAAGCATAATGTCATTATAACATCATATGATGTTGTCCGTAAAGATATTGATTATTTGGGACAGCTGTTCTGGAATTACTGTATTTTAGACGAAGGACATATAATCAAGAATGCTAAGTCTAAGGTTACACTTGCTGTAAAGCAGTTGAAAGCCCAGCACCGTTTAATATTGAGTGGGACACCAATCCAGAATAACATAATGGACTTGTGGTCTCTTTTTGATTTTCTGATGCCTGGATTTCTTGGAACAGAGAGACAGTTCCAAGGAACATACGGAAAACCACTTTTAGCTTCTAGAGATCCAAAGTGCTCTGCTAAGGATGCTGAAGCAGGAGCACTTGCTATGGAGGCATTGCATAAGCAGGTCATGCCTTTCCTCCTTCGAAGGACTAAGGATGAAGTCTTGTCTGATTTGCCGGAGAAGATAATTCAAGACAGATACTGTGATTTGAGCCCTGTACAACTTAAACTTTATGAACAGTTTTCTGGTTCTCGTGCAAAGCAAGAAATGTCATCTGTTGTAACGACAAATGAACCTGCTGCAGCAGAAGGAAGTAGCCGTAATACTAAAGCGGCTTCACATGTTTTCCAGGCACTCCAATACTTGCTAAAACTCTGCAGTCATCCATTGCTTGTCTCTGGTGGGAAGATTCCAGATTCATTCTCTGCCATATTCTCGGAACTGTTTCCTGCTGGCTCTGATGTCATTTCGGAACTTCACAAACTCCATCACTCCCCAAAATTAGTCGCTCTTCATGAGATTCTTGAAGAGTGTGGAATTGGAGTTGATGCTTCAGGTTCTGAGGGTACAGTCAGCATTGGGCAGCACAGGGTCTTGATATTTGCTCAACATAAGGCTTTCCTTGATATAATTGAAAGAGATTTGTTTCAGACACACATGAAGAATGTCACATATTTGAGGCTGGATGGATCAGTTGAGCCAGAAAAGCGTTTTGAAATCGTCAAAGCTTTCAATTCAGACCCTACCATTGACGTCTTGCTGCTTACAACACATGTTGGGGGGCTTGGTCTGAACTTGACATCTGCAGACACCCTTGTTTTTGTGGAGCATGACTGGAATCCTATGCGTGATCATCAGGCTATGGATAGAGCACACAGGCTTGGCCAGAAAAAAGTAGTTAATGTCCACCGTCTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGCCTACAAAGGTTCAAATTGTCGGTGGCCAATGCTGTCATTAATTCAGAAAATGCCAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCTGCAGAAATCTCCAAGAAGGGGGCTTCTGTCGTGAAAAGTTCAGAGGACAACTCTGACGGAGACACTAAATTAGTAGGCAGTGGGAAGGGGTTGAAAGCAATACTTGGGGGATTGGAGGATCTATGGGACCAATCACAATATACAGAGGAGTACAATCTGAATCAATTCTTGGCAAAGCTTAATGGCTAA 6153 0.4115 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLSSLLKKVSQYLRSKNWDTRVAAAHAIGSIAENVKHISLNELITSVVSKISEYGKSCSVEDLCAWPYLQSKISGSSFRSFDMNKVLEFGALLASGGQEYDIGNDNSKNPKERLVRQKQNLRRRLGLDVCEQFMDINDVIRDEDLMAPKFESQINGIDHRVFTSCSVHNIQKMVAKMVPSVKSKWPSARELNLLKRKAKINSKDQTKSWCEDGSTEASGAQNLTSKGICADTVNYGKAFVDANHDDDGLDHDGDGQWPFNTFVEQLIIDMFDPVWEIRHGSVMALREILTHQGASAGVFKHDSRFGGTLFVELEDKSIPKILKREREIDLNMQVSADESVSNLKKPKLEDLSSSTSLDSVMTSSNEGDIEISICSETHGSDIPLDNVNGKFNGNSVAMDLESPSDSLHDAYNESANLAEQKGYSDDSNIPSGNPNVLRNLPQNCELMNLVKVARSSWLRNCEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGATFKYMHPALVNETLNILLKMQCRPEWEIRHGSLLGIKYLVAVRQEMLSDLLGRVLPACKSGLEDPDDDVRAVAADALVPAAAAVVALQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMIPKMYKVFKLGDNEIENADGGCGDDDGEENPYVLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKRNMSEPSSASFWPSSIFGDTLQIVFQNQLLETNEDILQCSERVWSLLVQCSVEDLEAAARSYMSSWIELASTPFGSALDSSKMYWPVAFPRKSQLRAAAKMRAVKIGNEYGGDPGLDSTKLTILQDKNRDVALNSVKIVVGADMDTSVTHTRVVTATALGIFASKLPEGSLKYVIDPLWSSLTSLSGVQRQVASMILISWFKEIKNMSLSKIPDGIPAALRDWLLDLLACSDPAFPTKGSHLPYAELSRTYSKMRGEAGQLLNAVKSSGMFNELLETTKIELDSVSVDDAIGFASKIPAFCNDSSTNESLGKNTMDDIESSKQRLLTTASYLKCVQSNLHVTVTSAVAAAVVWMAQFPTRLTPIILPLMASVKREQEEIIQVKSAEALAELMYHCVTRRPCPNDKLIKNICSLTCMDPSETPQAKSICSIESIDDQGLLSFKTPVSKQKSKVHVLAGEDRSKVEGFISRRGSELSLRLLCEKFGALLFDKLPKLWDCLTEVLKPSSSESLLATNEKQVTAAIESICDPQTLINNIQVVRSVAPMLNEELKPKLLTLLPCIFKCVQHSHVAVRLAASRCITSMAHSMKVKVMGAVVENAIPMLEDASSVHARQGAGMLINFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRKSVTHSFAALVPLLPLARGLPQPIGLGEGVSRNAEDLHFLEQLLDNSHIEDYELCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHRTPIGNDDLLPSLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSAPDRMLLRDNFCKHNVIITSYDVVRKDIDYLGQLFWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQGTYGKPLLASRDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSRAKQEMSSVVTTNEPAAAEGSSRNTKAASHVFQALQYLLKLCSHPLLVSGGKIPDSFSAIFSELFPAGSDVISELHKLHHSPKLVALHEILEECGIGVDASGSEGTVSIGQHRVLIFAQHKAFLDIIERDLFQTHMKNVTYLRLDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKLSVANAVINSENASMKTMNTDQLLDLFASAEISKKGASVVKSSEDNSDGDTKLVGSGKGLKAILGGLEDLWDQSQYTEEYNLNQFLAKLNG* 2051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0026 2050 Gene3D - 1426 1685 IPR038718 -
Lja3g0026 2050 Gene3D - 1696 2012 IPR027417 -
Lja3g0026 2050 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1804 1978 IPR001650 -
Lja3g0026 2050 SMART helicmild6 1846 1932 IPR001650 -
Lja3g0026 2050 CDD SF2_C_SNF 1801 1943 - -
Lja3g0026 2050 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1433 1686 IPR027417 -
Lja3g0026 2050 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1687 1988 IPR027417 -
Lja3g0026 2050 CDD DEXHc_Mot1 1454 1686 IPR044078 GO:0005524
Lja3g0026 2050 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1466 1636 IPR014001 -
Lja3g0026 2050 Gene3D - 1207 1411 IPR011989 -
Lja3g0026 2050 Gene3D - 3 96 IPR011989 -
Lja3g0026 2050 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 1982 IPR044972 GO:0003677|GO:0016887|GO:0017025
Lja3g0026 2050 Pfam SNF2-related domain 1472 1768 IPR000330 GO:0005524|GO:0140658
Lja3g0026 2050 Gene3D - 502 688 IPR011989 -
Lja3g0026 2050 SUPERFAMILY ARM repeat 6 1493 IPR016024 -
Lja3g0026 2050 SMART ultradead3 1450 1646 IPR014001 -
Lja3g0026 2050 Pfam Domain of unknown function (DUF3535) 783 1237 IPR022707 -
Lja3g0026 2050 Pfam Helicase conserved C-terminal domain 1832 1932 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0026 Lja-Chr3 346422 365380 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0026 1427 1987 RAD5 or RAD16-like Gene Family AT1G02670 26.837 2.58e-43 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja3g0026 DUF3535 5.5e-103 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0026 K15192 - gmx:100777977 3508.77