Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0017 ATGATGCAACCTGACGGTGGTTTGTCACGTTTCCGTTCAGCTCCGGCGACATGGTTGGAAGCACTTCTTCTGAAGGATGAAGAAGAACTGGAAATCCAGGAGGAGCCTTTAACCTTCACTCAGCTGCTTTCCAACGCTGCTGGCCCTGGTCCCTCCTCTTCTCTCTTTCCCTCTCATTCTCAACAATACTTGTCCAGCCCCAATCCCATCACACACCACGACCAGGAATTTGAGCATGGTGGTAAAGCAGCATCTGACATCAGAATGGACAATGTTCTAGAGGATTCGGTGCCTTGTAAACTTCGGGCAAAGCGTGGCTTTGCTACGCATCCTAGGAGCATTGCTGAAAGGGTTCGGAGGACACGAATCAGTGACCGCATAAGAAAGCTTCAGGAACTTGTGCCCAACATGGATAAGCAAACAAATACTGCTGATATGCTAGACGAGGCGGTAGCTTATGTAAAGTTTCTTCAAAACCAAATTCAGGAACTATCAGAGCACCAACGGAGGTGTAAATGCATGGTTCAAGAGTAA 534 0.4794 MMQPDGGLSRFRSAPATWLEALLLKDEEELEIQEEPLTFTQLLSNAAGPGPSSSLFPSHSQQYLSSPNPITHHDQEFEHGGKAASDIRMDNVLEDSVPCKLRAKRGFATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQIQELSEHQRRCKCMVQE* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0017 177 Pfam Helix-loop-helix DNA-binding domain 112 158 IPR011598 GO:0046983
Lja3g0017 177 PANTHER TRANSCRIPTION FACTOR BHLH117-RELATED 69 171 - -
Lja3g0017 177 MobiDBLite consensus disorder prediction 43 84 - -
Lja3g0017 177 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 109 175 IPR036638 GO:0046983
Lja3g0017 177 CDD bHLH_AtbHLH_like 112 165 IPR045239 -
Lja3g0017 177 Gene3D - 108 177 IPR036638 GO:0046983
Lja3g0017 177 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 107 157 IPR011598 GO:0046983
Lja3g0017 177 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 69 171 - -
Lja3g0017 177 MobiDBLite consensus disorder prediction 43 71 - -
Lja3g0017 177 Coils Coil 147 177 - -
Lja3g0017 177 SMART finulus 113 163 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0017 Lja-Chr3 253642 256787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0017 80 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 74.490 2.74e-47 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g0017 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0017 - - lja:Lj3g3v3754390.1 253.832