Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0012 ATGGCTTCCACAGCTGCTCCGCAGTTTCTATTATCCAATCCCATCTTTGGAAATCACCCAGCAAGAGGAGCAAAGTTTTTTCTCAGGATAGGAACCACAAACTCTCAGTACACTACTCACGCCTCTCGAAGACCACCCCCTGGAGTTGACACAAGAATCCATTGGAATAACGAAGATGAAGGCTGGATTGGAGGTACCAAGAAGAATGCGGAGGAAAAACCCAAGAACCTTTTGGGTGAAAACTTTGCTGATTTGCTTAGCAGTTCTTCAGGTTCTCATTACGAATTCTTAGGAGTTTCAGCGGACTCGGATTTAGAAGAAATTAAAGTAGCTTACCGAAGGCTATCAAAGGAGTACCATCCAGACACAACTTCCCTTCCTCTAAAAACAGCCTCAGAAAAATTCATGAGATTAAGAGAGATTTACAATGTTCTTAGCAACGAGGAAAGTCGGAGATTTTATGACTGGACCCTTGCTCAAGAAGCTGCAAGCCGCCAAGCAGAGAAAATGAAAATAAAATTTGAGGATCCTTATGAGCAAGAAGTGAAGAACTGGGAACCTGTTCCAGATATGGTTGACCGGCTAGGTGGAAGGAATATGAAGCTTAGTGATCAAGCAGTTTCTGCCATTACTATTGATATTTTTATCATTATTTTTGCCATATGCTGTATCATATATGTAATTTTCTTCAAAGAACCATATTAG 705 0.4099 MASTAAPQFLLSNPIFGNHPARGAKFFLRIGTTNSQYTTHASRRPPPGVDTRIHWNNEDEGWIGGTKKNAEEKPKNLLGENFADLLSSSSGSHYEFLGVSADSDLEEIKVAYRRLSKEYHPDTTSLPLKTASEKFMRLREIYNVLSNEESRRFYDWTLAQEAASRQAEKMKIKFEDPYEQEVKNWEPVPDMVDRLGGRNMKLSDQAVSAITIDIFIIIFAICCIIYVIFFKEPY* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0012 234 Gene3D DnaJ domain 82 179 IPR036869 -
Lja3g0012 234 SUPERFAMILY Chaperone J-domain 90 161 IPR036869 -
Lja3g0012 234 ProSiteProfiles dnaJ domain profile. 92 158 IPR001623 -
Lja3g0012 234 ProSitePatterns Nt-dnaJ domain signature. 135 154 IPR018253 -
Lja3g0012 234 PRINTS DnaJ domain signature 94 112 IPR001623 -
Lja3g0012 234 PRINTS DnaJ domain signature 130 150 IPR001623 -
Lja3g0012 234 PRINTS DnaJ domain signature 112 127 IPR001623 -
Lja3g0012 234 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 1 234 IPR044618 -
Lja3g0012 234 Pfam DnaJ domain 93 155 IPR001623 -
Lja3g0012 234 SMART dnaj_3 91 150 IPR001623 -
Lja3g0012 234 CDD DnaJ 93 147 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0012 Lja-Chr3 213755 214947 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0012 86 160 C2H2 Transcription Factor Family AT1G74250 38.554 4.14e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0012 K23051 - gmx:100819309 329.717