Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0008 ATGGCGGCGTCCGATAATCCTTATGAGATCATCGACGATGATGAGGGGTTTGATTGGGAAGCGGCTGCAAGAGAAATCGACACCGTATGCCAAACGACCAGCGACAGCGACCCAAAGGGAAAGGGAAAGGGAAAGGGTAAGGTTTCTCCCAATCCCAAGAAAAAGCAATTCACTCTCGATAAGTTTGTGGCCATTGCCAAGAAGGAAACCCCGACAAAACCTCAGTTGGAAGAAGATGCTGAGAGCCCTAACTGCACCCACCACATTGACGTCGATGCAGCTAAAACTTGGATCTATCCTGTTAATGTTCCGCTCCGTGACTATCAGTTCCATATTTCCCAGTCCGCACTCTTTTCAAATACATTGGTGGCCCTGCCAACTGGACTTGGCAAAACACTCATTGCCGCGGTTGTTATGTATAACTACTTCAGATGGTTTCCTCAAGGCAAAATAGTCTTCACTGCTCCTTCTCGACCATTGGTCTTGCAGCAGATAGAAGCATGCCACAATATTGTGGGAATACCTCAAGAATGGACAGTTGATATGACCGGTCAGTTAAGTCCTCCTAAAAGAGCACGATTTTGGAAAACAAAGAGAGTATTCTTTGTCACCCCACAAGTCTTTGAAAAGGATATTCATTCAGGCACATGTTTGGTGAAGTACTTAGTATGCTTGGTTATTGATGAAGCTCACAGGGCAATGGGAAATTACTCTTACTGTGAAGCAGTTCGTGAGTTAATGGCTGTACAAGTGCAACTGAGAATATTAGCGTTAACTGCGACACCAGGGTCAAAGCAGCAGACTGTCCAGGATGTTATTGATAATCTGCATATCTCCAAGCTTGAATATCGCAGTGAAACTGACCCTGACGTTATCTCTTATGTTCATGATAGGAAGATAGAGTTGATACAGGTTGCAATGGGCCTAGATGCTGTAGAAATAAACAATAAGTTTTTGGAAGTGATACGCCCTATAGTTGCCAGGCTTACAGCTATTGGGGTCATTCAGAACAGGGATTACCGCACTTTGAGCCCTTGTGTATTGCTTGAAATAAGGGAAAAGTTTCGCCAGGGGCATAGGCAAGATCTTTCTCATGACAACTATGGAGATATTGAAGGGTATTTTGGAGTTCTTATTACTCTTTATTACATCCACAAGCTGCTTTCAAGTCATGGAATAAGGCCAGCTTATGAGATGCTTGAAAGAAAGTTGAAGCAAGGGTTTTTCGCAAAATATGTGAGTAAAAATGATGATATTCATAAAGCTAGGCAACTTATGCAACAAAGCTTGTTTCATGGAGCATCGAGTCCCAAATTGTCCAAGATGCTAGAAGTATTACTGGAGCATTTCAAAACCAATGATCCACAAAACTCCAGGGTAATTATTTTCTCCAATTACAGAGAAAGTGTCAGGGACATAATGGACGCACTTACAAATAGTGGGGGTCCAGTCAGAGCTACCCAGTTTATTGGTCAAAGTTCAGGAAAAACAATGAAAGGTCAATCCCAAAAAGTTCAACAGGCTGTGCTGAAGAAATTCCGGTCTGGTGCCTTCAATGTCATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATTATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAACGAATGGGGAGAACTGGAAGAAAGCACGATGGGCGATTAAAAGGCTACTTGAGAAAACAGGCAAAGAGCAAGACTATAAGTAAACACATGCGAAATGGGGGCGTAAATAGCTTTGTCTTTCATCCTAGTCCAAGGATGATTCCCCACATCCTCAAACCAGAAGTTCAGTATGTTGAGCTGTCTATTGAGAAATTTATTCCTCGTCAAAAGAATGTGTCAGATGACCATCTTCACATTTCTCCCTCAAAGGACAAACTCACTCTTGCTGAGATTGATTTACTTGAAAATTATTTCCACCAAACCGGGGAAAACAAATGTAGATTGTCTCTTATTGCGTTTCCCCACTTTCAGACCTTTCCTTCCAGAGTACATAAAGTGAAGCATTCCTCTGGAACGTTGATGCTTATAGACATGATGCAGCGTTTGCAAGGACTAATAGCAATTCCCAAAGATAGAAAAACTCTTCAGGAACATCAGTGGTTAGGAGATAGTAAGCAAATTGCTATTGCCGAGCTCGATGAAGCTATAAAAGACAATGAATCATGCCGTACCCATACAGTGGGAAGGAACGGTGTCTCTGTGAGTTGTCTGGAACTGGATTCCTGTCATTTGGGGATTCAAACAAAAGAGTTTGTTGATCTAACTCAAGAAGATAGTACACTTTGTGACTTGGTTAAGAATCAAGATGAAACATGCGAGGGCGATGAGATAATTCCTGAGACTCCAATTGCTATGAGAAATGTGTCAAATGAAGGAGCTAAGGCTGGTGAAACGGTAAATGTTGCTGAGAGTCAGACTTCTTTGATGGCTGCAAATGCATGCATTAGTGGCATGGGAGATGAAGAATTTAGTCCCCGTTTAACTAATTTTATAAAAAGTGGCGTTGTTCCAGAGTCTCCAATTGATGAAAGAGACAAGTGTGTCATTAGAGACTGTATTTCACCTGTTCATTTCCAGGAAGAACAGGGTGTTAGTGCTTTAAATTCTAGGGATACTGAAAAGGTCATCATTGATCATGACACTTGTAAGAATGTTTGTACTTCTCCTGTCAGTAAAACTCAAACCCCTTTACTTAAGCTGAAGAATTGTGCAATTAGAAGAGGACGCGTCTTCCTTTCTCAAATCGATGAAGCCCATACATATATCGCTGACCCAAGCTTCAGTGAAGAGTCACATTCAGCTTGTGGTGAAATGTCTATGAGCATTAAACCTGCACAGAAATTTAAAAGGTTGCGGAAAGTTGAAGATACCAAGAGTAATATGAATCAGAAAGACAATTTTTTGGCTTCAACAGCAAACTTTTTCGAATCATCTTCTCCTGCCTCCAATCCCACACACTATAAGCATGGCCAAGGTAAAAGGAAGTCAACACATAATGTGAGAGAATTCATTGAGGAGGAAGCTGAGGTATCTTCAGATGCCTATGTATCTAATGATGAAGATGTCGAGGATGGCAATTCACATGACAGTTTCATAGATGACAGGACCAACCCTACAGCGGCCAGTCAACCTGAAGCTAGTAGAATTGACATGATGGCAATTTACAGGCGTTCTCTACTCAGTCAAACACCAATTAATGGAGGACTTAATTTTCCTGCTACCTTCAGCCCTGACGACGTGATGACTACAGCCAGCATTAGTGAAAGTAGGGATTCATCAGGCAAGACAGTGAGTCATTTCCGGACAGGACCAACCAATCAGTCAGCTAATCGGACTTCAGAATCAGTTCATATCGACCAAATAACCTCAGAAGCAGTGCTTTCAACTACTTCCCTTAGTGGGACTGGGACAGACGTAAGAAGTCGTAAAAGAAGATTGACATTTTATCATTCTGGACATTTTCCAAATGTGAACCTTGAACAAGAATTTGCACTTGAATCAAAGAAAGAATCAGTGGATGGCGAGGCAACTATAGATGTTCTATGTGATGATCAGTTTTATAATGATCTTGATCTTGACGAATTGGAGGCACAAGCAACATCGCTTCTGAAAGAGAAATCAGATTTGTCAAGTCACAAGCAAACTACAGCCCCTCAATCTCACGCAACAAACCTTGATGTTTTTAGGTCTCCATCATTCGACCTTGGCATATGA 3753 0.4149 MAASDNPYEIIDDDEGFDWEAAAREIDTVCQTTSDSDPKGKGKGKGKVSPNPKKKQFTLDKFVAIAKKETPTKPQLEEDAESPNCTHHIDVDAAKTWIYPVNVPLRDYQFHISQSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTVDMTGQLSPPKRARFWKTKRVFFVTPQVFEKDIHSGTCLVKYLVCLVIDEAHRAMGNYSYCEAVRELMAVQVQLRILALTATPGSKQQTVQDVIDNLHISKLEYRSETDPDVISYVHDRKIELIQVAMGLDAVEINNKFLEVIRPIVARLTAIGVIQNRDYRTLSPCVLLEIREKFRQGHRQDLSHDNYGDIEGYFGVLITLYYIHKLLSSHGIRPAYEMLERKLKQGFFAKYVSKNDDIHKARQLMQQSLFHGASSPKLSKMLEVLLEHFKTNDPQNSRVIIFSNYRESVRDIMDALTNSGGPVRATQFIGQSSGKTMKGQSQKVQQAVLKKFRSGAFNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRLKGYLRKQAKSKTISKHMRNGGVNSFVFHPSPRMIPHILKPEVQYVELSIEKFIPRQKNVSDDHLHISPSKDKLTLAEIDLLENYFHQTGENKCRLSLIAFPHFQTFPSRVHKVKHSSGTLMLIDMMQRLQGLIAIPKDRKTLQEHQWLGDSKQIAIAELDEAIKDNESCRTHTVGRNGVSVSCLELDSCHLGIQTKEFVDLTQEDSTLCDLVKNQDETCEGDEIIPETPIAMRNVSNEGAKAGETVNVAESQTSLMAANACISGMGDEEFSPRLTNFIKSGVVPESPIDERDKCVIRDCISPVHFQEEQGVSALNSRDTEKVIIDHDTCKNVCTSPVSKTQTPLLKLKNCAIRRGRVFLSQIDEAHTYIADPSFSEESHSACGEMSMSIKPAQKFKRLRKVEDTKSNMNQKDNFLASTANFFESSSPASNPTHYKHGQGKRKSTHNVREFIEEEAEVSSDAYVSNDEDVEDGNSHDSFIDDRTNPTAASQPEASRIDMMAIYRRSLLSQTPINGGLNFPATFSPDDVMTTASISESRDSSGKTVSHFRTGPTNQSANRTSESVHIDQITSEAVLSTTSLSGTGTDVRSRKRRLTFYHSGHFPNVNLEQEFALESKKESVDGEATIDVLCDDQFYNDLDLDELEAQATSLLKEKSDLSSHKQTTAPQSHATNLDVFRSPSFDLGI* 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0008 1250 MobiDBLite consensus disorder prediction 28 54 - -
Lja3g0008 1250 CDD FANCM_ID 312 405 - -
Lja3g0008 1250 Gene3D - 430 586 IPR027417 -
Lja3g0008 1250 Pfam Helicase conserved C-terminal domain 445 561 IPR001650 -
Lja3g0008 1250 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 779 1215 - -
Lja3g0008 1250 MobiDBLite consensus disorder prediction 988 1057 - -
Lja3g0008 1250 CDD SF2_C_FANCM_Hef 436 565 - -
Lja3g0008 1250 Gene3D - 101 295 IPR027417 -
Lja3g0008 1250 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 280 IPR014001 -
Lja3g0008 1250 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 16 699 - -
Lja3g0008 1250 PANTHER FANCONI ANEMIA GROUP M PROTEIN 779 1215 IPR039686 GO:0006281|GO:0043138
Lja3g0008 1250 Coils Coil 1205 1225 - -
Lja3g0008 1250 Gene3D hef helicase domain 310 429 - -
Lja3g0008 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 565 IPR027417 -
Lja3g0008 1250 SMART helicmild6 471 562 IPR001650 -
Lja3g0008 1250 MobiDBLite consensus disorder prediction 1099 1129 - -
Lja3g0008 1250 CDD DEXDc_FANCM 103 284 IPR044749 GO:0005524
Lja3g0008 1250 PANTHER FANCONI ANEMIA GROUP M PROTEIN 16 699 IPR039686 GO:0006281|GO:0043138
Lja3g0008 1250 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 438 599 IPR001650 -
Lja3g0008 1250 SMART ultradead3 101 301 IPR014001 -
Lja3g0008 1250 Pfam Type III restriction enzyme, res subunit 119 262 IPR006935 GO:0003677|GO:0005524|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0008 Lja-Chr3 168482 178574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0008 443 560 Eukaryotic Initiation Factors Gene Family AT3G13920 29.661 1.01e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0008 K10896 - gmx:100820078 1670.21