Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3544 ATGGATTGTGATGAAGACCCTCCTCAAAACCCAGCTAAAAGGCACAAATGCTCAGCATGCTATAAGCAGTATAAGAAGAAAGAATCTCTGATCGAGCACATGAAGGCCTCATATCACTCTGTCCATCAGCCCAGATGTGGTGGTTGTCTGCTTTGCTTGACACTATTTGACAGCCCCAGGTCTCTCGGTGAGCATAGAGTGACATGTCGCCTATCATCTCCTGGTCCTGTACCCCTAGGAGTATACACAATGCCCTATATAGGCTCCCAAATTGATCTTCGTGATTCGTCTGATGAAAATCACCCTGGAGCTGTTGCAATAGACTGTGAAAGAGTTGGTGGTGGAAGTGATGGATTGCTAGAACTTTGTGTAAGAGTATGCTTGGTTGATGAAGATGAGAATTTACTTTACCATGCATATGTACAACCTCCAATCCCTGTTACAAACTATAGACATGATATAACTGGGATAACAGAAGATGATCTTAGAGATGCGAGGCCCCTTAAAGAAGTTCAAGAGAAGATATTGCAAATTTTATACAATGGAGAATTCATGAGCAAAGTTAGATTGGACGGAGGGAAGGCCAGAGACACTTCAATGTACCGTCCATTGATGAAAACAAACTTTGCTAGCCATTCACTCAAGTATCTTACCAGAACATATCTAGGTTATGATATCCAATGCGGCACTTATGACCCATATGAAGATAGTATTTCTGCAATGAGGTTGTATAAGAAAAATTTTGATGGTTGGATATCTAAGGAACTTGACAACCTCACACCAGATGAACTCTTTGACACGTCAAAATCAGACTACAAGTGTTGGTGTTTGGATTTGAAACCAAGATTGGCAGCCTGA 858 0.4149 MDCDEDPPQNPAKRHKCSACYKQYKKKESLIEHMKASYHSVHQPRCGGCLLCLTLFDSPRSLGEHRVTCRLSSPGPVPLGVYTMPYIGSQIDLRDSSDENHPGAVAIDCERVGGGSDGLLELCVRVCLVDEDENLLYHAYVQPPIPVTNYRHDITGITEDDLRDARPLKEVQEKILQILYNGEFMSKVRLDGGKARDTSMYRPLMKTNFASHSLKYLTRTYLGYDIQCGTYDPYEDSISAMRLYKKNFDGWISKELDNLTPDELFDTSKSDYKCWCLDLKPRLAA* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3544 285 PANTHER EXONUCLEASE FAMILY PROTEIN 195 246 - -
Lja2g3544 285 PANTHER EXONUCLEASE FAMILY PROTEIN 12 49 - -
Lja2g3544 285 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 246 281 - -
Lja2g3544 285 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 48 187 - -
Lja2g3544 285 Gene3D - 101 265 IPR036397 GO:0003676
Lja2g3544 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Lja2g3544 285 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Lja2g3544 285 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 12 49 - -
Lja2g3544 285 Pfam Exonuclease 105 185 IPR013520 -
Lja2g3544 285 SUPERFAMILY Ribonuclease H-like 105 245 IPR012337 -
Lja2g3544 285 PANTHER EXONUCLEASE FAMILY PROTEIN 246 281 - -
Lja2g3544 285 PANTHER EXONUCLEASE FAMILY PROTEIN 48 187 - -
Lja2g3544 285 SMART exoiiiendus 103 253 IPR013520 -
Lja2g3544 285 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 195 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3544 Lja-Chr2 84542341 84544608 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3544 14 278 C2H2 Transcription Factor Family AT5G40310 41.210 7.27e-82 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3544 K18327 - gmx:100788682 401.364