Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3528 ATGCCACTACTACCTATAAAAGCGTTGATACTATGCGCTCTCTCTGGAGCTCTCACTAGCTGCTTTGCAATTGCTGGGGCTCTCACAGGAGCTATAGCAGGTGCTTTAGCAGCTAAGGCTACCAAGAGTGGTTTTTTCCGGGGAGTTTCTTTGGGTGCCATTGCTGGGGCAATACTCTCGGGGGAGGTGTTGGAAGCTTCCAGGGCCTACTGGTGTATGGAGCAAACTGTTCTAACACTGGTTGGGGTTGCAAATATGGGCTATGATGATATTCATGATGTTCATAACTTACTAACATCCAGAGGACTGTCAGGGGACTCACTGAAGAAACTGCCGCACCATATGATCTTGAAGGACATGAAGGCAGAGAATTCTTACTGTACAATATGTTTGCAGCCAAGAAGCCTACCTGGCTGTCACCATACATTTCACTTGATATGCGTTGACAAGTGGCTTGTCAAGAATGATTCATGTCCTGTCTGCAGACAGAATGTGTAG 498 0.4679 MPLLPIKALILCALSGALTSCFAIAGALTGAIAGALAAKATKSGFFRGVSLGAIAGAILSGEVLEASRAYWCMEQTVLTLVGVANMGYDDIHDVHNLLTSRGLSGDSLKKLPHHMILKDMKAENSYCTICLQPRSLPGCHHTFHLICVDKWLVKNDSCPVCRQNV* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3528 165 Pfam Ring finger domain 126 162 IPR001841 -
Lja2g3528 165 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 81 164 IPR044523 -
Lja2g3528 165 SMART ring_2 127 161 IPR001841 -
Lja2g3528 165 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 81 164 - -
Lja2g3528 165 ProSiteProfiles Zinc finger RING-type profile. 127 162 IPR001841 -
Lja2g3528 165 SUPERFAMILY RING/U-box 108 165 - -
Lja2g3528 165 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Lja2g3528 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 165 IPR013083 -
Lja2g3528 165 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 6 74 - -
Lja2g3528 165 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 6 74 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3528 Lja-Chr2 83695744 83698280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3528 6 165 C3H Transcription Factor Family AT1G74410 44.500 3.89e-46 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3528 - - mtr:MTR_4g108830 231.876