Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3511 ATGTCAGTGTTGATCGTGACGAGTTTAGGGGAGCTGTTGTTCAATTTATGCTATGGCATCCTCTTTTTCAGGTTTCTATATGGCGATCAAGCTCGGTTTTTCAGCGATGAGATTCATATCGACCTGAAGCATTCCAAGACTGGAACAGTTGCCATGGCAAGTGCAGGACAGAATCTCAATGCTTCACAGTTTTATATCACTCTGCGTGATGACCTTGATTACCTTGACGGAAAGCACACTGTTTTTGGTGAGGTAGTTGAAGGATTTGAAGTTTTGACTAGAATAAATGAGGCTTATGTGGATGAGAAGAGCAGACCATATAAAAATATAAGAATCATGCACACATACATCTTGGATGATCCTTTTGTTGATCCTCCTGAGCTAACTGAGTTCATTCCTGATGCTTCACCAGAAGGGAAGTGTAAAGAAGAGGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCATGGATGAACAATTAAATCCAGCAGAGCTTGAGGAGGTTATTAAAACGAAGGAAGCACATTCTAGGGCAGTTGTACTTGAAAGTATTGGGGATATTCCTGATGCTGATATTAAGCCTCCAGACAATGTACTATTCATCTGTAAATTGAACCCGGTTACTGAGGATGCGGACTTGCATACAATATTTTCACAATTTGGAACTGTGTCATCGGCTGAAATCATCCGTGATCAGAAGACTGGTGACAGTCTATGCTATGCTTTCATAGAGTTTGAAGACAAACAGGCTTGTGAGCAGGCATATTTTAAGGTATGCTCAAGTGAATACATTGCTGCCAATGCCGAGAAACTCCCAATTATCTATGAGAGCTGGAATTTAGTTCCAAACAAAGCTAACAAGATATATGTTTGGGACTCCATTGTAAAGAGAAAATTCCTAGTCAATGATGGGCAGCATAAGAAGTGGATACTAAAAAATATTGGAAAAATGTGGAGGGATAGTTGTGCGCGGTTGTTTGCTGAATGTTACAAACCTGCACTTAGTTGGGAAGCAAACCTTGATAGGCGCCCAGAAGGCATGCCGATAGAGCAATGGGCTTCTTTTCTAACTTACCGTCTGAAGGAGGAAACAATGAAAATGTCTGAAACGAATGCCTTAAATAGACAAAAACAATCTATACCGCACACGCTTGGCACAAAGACCATTGCAAGGAAGAGGCATGAGCTGGATATTGAAACTGGCCGATCGTATAGTAGAGCGGAAATGTACTCCATTTCACACAAGAAAAGTGATGACTCTTTTGTAAATGGAGAAGCAAAACAAAAGAGTGATTTATTGGAGAAGGAACTTGAAAAGAATTGTTCTGAAGAGGCTGCCTATGTTAGGAAAGATCGCTCAGGATACGTGAGAGGCATGGGCTTTGGTGTTTGTCCATCTCAAGTGTTGGAATTTGCTAGCAGCTCTAGTAGCTCGCAATTTGCTGGCATCACATTGGGTGAATGGAATGCTATGAAATCAGAATTGCAGGAGAGCAATGCGAAATTTCAAGCTTTAGAGGAACGAATGAATTCTTTCATGCAACAGTTTGGAGATCAAGGGACACCTAACCAGGTCAATTTGTCATGA 1593 0.4118 MSVLIVTSLGELLFNLCYGILFFRFLYGDQARFFSDEIHIDLKHSKTGTVAMASAGQNLNASQFYITLRDDLDYLDGKHTVFGEVVEGFEVLTRINEAYVDEKSRPYKNIRIMHTYILDDPFVDPPELTEFIPDASPEGKCKEEVDDDVRLEDDWVPMDEQLNPAELEEVIKTKEAHSRAVVLESIGDIPDADIKPPDNVLFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKVCSSEYIAANAEKLPIIYESWNLVPNKANKIYVWDSIVKRKFLVNDGQHKKWILKNIGKMWRDSCARLFAECYKPALSWEANLDRRPEGMPIEQWASFLTYRLKEETMKMSETNALNRQKQSIPHTLGTKTIARKRHELDIETGRSYSRAEMYSISHKKSDDSFVNGEAKQKSDLLEKELEKNCSEEAAYVRKDRSGYVRGMGFGVCPSQVLEFASSSSSSQFAGITLGEWNAMKSELQESNAKFQALEERMNSFMQQFGDQGTPNQVNLS* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3511 530 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 31 115 IPR002130 GO:0000413|GO:0003755
Lja2g3511 530 Pfam Plant transposase (Ptta/En/Spm family) 352 447 IPR004252 -
Lja2g3511 530 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 289 IPR000504 GO:0003723
Lja2g3511 530 SUPERFAMILY Cyclophilin-like 1 132 IPR029000 -
Lja2g3511 530 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 117 IPR002130 GO:0000413|GO:0003755
Lja2g3511 530 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 77 92 IPR002130 GO:0000413|GO:0003755
Lja2g3511 530 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 48 63 IPR002130 GO:0000413|GO:0003755
Lja2g3511 530 Gene3D - 139 264 IPR012677 -
Lja2g3511 530 Gene3D - 25 128 IPR029000 -
Lja2g3511 530 SUPERFAMILY RNA-binding domain, RBD 185 258 IPR035979 GO:0003676
Lja2g3511 530 Coils Coil 490 517 - -
Lja2g3511 530 SMART rrm1_1 200 269 IPR000504 GO:0003723
Lja2g3511 530 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 23 260 IPR035542 -
Lja2g3511 530 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 256 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3511 Lja-Chr2 82890172 82900563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3511 34 123 U-box Gene Family AT5G67530 38.889 7.90e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3511 K12735 - gmx:100794150 426.402