Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3508 ATGTTCTGTAAGGAGAATAATGGCAACGGCTACGAGCAGCAGCAGCAGCAGCCACCGGCAATGGTGTACGGCCAAAACCACCGATACAGAGAGCGAGTCCGCCGTGGCAGTCGCAGGTCACGTGCTTCCTCTTCCAGTCCCCTTCCCGTTAGGGTTTCTGACACCGACCAACCTCGTCCTCCTTGCACCGATTACGACATGGCCTACTTCCATTCCTACGCTCACCTCGGTATCCACCAGGAAATGATCAAGGATCGTGTGCGGACTGAAACTTACAGGGAAGCAATCATGCGGCATCAGAGTTTTATTGCAGGCAAAGTTGTAGTTGATGTTGGATGCGGTACAGGAATCCTTTCTATATTTTGTGCTCAGGCCGGTGCGAAGCGGGTGTATGCAGTTGATGCGAGTGACATTGCCCTGCAGGCAAATGAAGTTGTTAAAGCAAATAACCTGTCTGATGTTATCGTTGTATTGCATGGACGAGTTGAGGATGTTGAAATTAATGAAGAGGTGGATGTTATAATTTCAGAATGGATGGGCTATATGCTTCTATATGAGAGTATGCTTGGAAGTGTTATTACTGCCAGAGATCGTTGGCTCAAACCTGGCGGTCTTATTCTTCCTTCAAGTGCAACGTTGTACATGGCTCCTGTTACACATACTGACAGATACAGTGAAAGCGTTGACTTTTGGCGCAATGTTTATGGAATTGATATGTCCGCCATGTTATCATTAGCTAAACAGTGTGCATTTGAGGAACCTTCAGTCGAGACCATATCTGGCGAAAATGTTTTGACATGGCCTCATGTGGTGAAATATGTTGATAGTTATTCTGTTACCATCAATGAATTAGAAACTGTAACAACAAAGTTTAAGTTCAACTCCATGATGCGAGCTCCACTACATGGTTTTGCATTTTGGTTTGATGTTGAGTTTAATGGGCCTGCAATAGCACCAACCAATTATCATTCGTCAACACCAATTATTGAGAATCATCAGGTGAATGGTAGTCAGAGAAAAAAGCGAACAAATCCAAATGAAGCACTGGTCCTGTCCACGGCACCTGAGGACCCTCCAACACATTGGCAGCAGACTTTGATATACTTCTACGATCCTATTGAGCTGGAACAAGATCAACTTATTGAAGGTTCAGTGACATTGACACAGAGCAAAGAAAATGTTCGATTTATGAATATTCACCTTGAATATAATTCAGGTGGTCGAGCGTTTGTGAAAGAGTCTGTTATGAGATGA 1254 0.4418 MFCKENNGNGYEQQQQQPPAMVYGQNHRYRERVRRGSRRSRASSSSPLPVRVSDTDQPRPPCTDYDMAYFHSYAHLGIHQEMIKDRVRTETYREAIMRHQSFIAGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIALQANEVVKANNLSDVIVVLHGRVEDVEINEEVDVIISEWMGYMLLYESMLGSVITARDRWLKPGGLILPSSATLYMAPVTHTDRYSESVDFWRNVYGIDMSAMLSLAKQCAFEEPSVETISGENVLTWPHVVKYVDSYSVTINELETVTTKFKFNSMMRAPLHGFAFWFDVEFNGPAIAPTNYHSSTPIIENHQVNGSQRKKRTNPNEALVLSTAPEDPPTHWQQTLIYFYDPIELEQDQLIEGSVTLTQSKENVRFMNIHLEYNSGGRAFVKESVMR* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3508 417 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 54 414 IPR025799 GO:0016274|GO:0018216
Lja2g3508 417 CDD AdoMet_MTases 108 207 - -
Lja2g3508 417 Gene3D Vaccinia Virus protein VP39 63 208 IPR029063 -
Lja2g3508 417 Gene3D - 210 415 - -
Lja2g3508 417 PANTHER BNAC03G41340D PROTEIN 54 414 - -
Lja2g3508 417 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 72 407 IPR029063 -
Lja2g3508 417 MobiDBLite consensus disorder prediction 1 22 - -
Lja2g3508 417 Pfam Ribosomal protein L11 methyltransferase (PrmA) 104 178 - -
Lja2g3508 417 MobiDBLite consensus disorder prediction 1 60 - -
Lja2g3508 417 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 66 400 IPR025799 GO:0016274|GO:0018216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3508 Lja-Chr2 82787529 82797807 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3508 69 384 C2H2 Transcription Factor Family AT3G12270 38.369 6.05e-67 222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3508 2 82787529 82797807 Lja2g3508 2 82787529 82797807 ECH