Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3498 ATGTCTTTGGCATCCAGGGTCCTGCCTGCTCTCCAGCCCATGAAATCGCTGCCTCCTGATCGAAGGGAAAACTGTGGAGATGCTAAATTGAGAAGCTCTGATGTGATTGGAACAAGTAGTCCTATAGATGATGCTCTGATAGGGGAGGAGGTTTCTGAGGAAGCTCAGGACCGTGCAGGGGACAACGGTCTTTTTGATGAGGACTTAGCGTATAGTGGAAAAGGCGTGTCAGTAGAGGAAAGGCCATCAACTGCTGATGAAGACTTAGAATCTGTTCCCCTGCCATTCCAACCGGTTTCAATGTCCTCCAGGGAGCTCAGGTGGAGTGATACAACACCTTATGCTTCAAAGAAGAAGCTTCAGTCTTGGTTTCAACTTCCAAATGGGAATTGGGAGCTGGTAAAGATAATAACAACTTCAGGAACTGAGTCTGTCATTTCACTGCTTGATGGGAAGGTTTTGAAAGTGAAAGAAGAAATTTTAGTGCAAGCAAATCCTGATATTCTTGATGGAGTGGATGACCTCATGCAGCTTAGTTATTTAAACGAACCATCAGTTTTGTACAATCTGCAATATAGATACAATCAAAATATGATTTATACGAAAGCGGGGCCTGTTTTGGTTGCTATAAATCCCTTTAAGAAAGTTCCTCTGTATGGTAACGAATATATTGAAGCCTACAAGCGCAAATCAGTTGAAAGCCCTCATGTATATGCAATTACAGACACAGCCATCCGAGAAATGATACGAGATGAAGTTAATCAGTCTATAATTATAAGTGGTGAGAGTGGAGCAGGGAAGACTGAGACAGCGAAGATAGCAATGCAATACTTGGCTGCCCTTGGAGGTGGAAGTGGAATAGAGTATGAGATATTAAAGACTAATCCAATACTAGAAGCCTTTGGTAATGCAAGAACATTGAGGAATGACAACTCAAGTCGCTTTGGAAAGCTTATTGAGATTCACTTCAGTGAAACTGGAAAAATCTCTGGTGCTAATATTCAAACATTTTTGCTGGAAAAGTCTAGAGTAGTCCAATGCAATGAAGGGGAAAGGTCATATCATATATTTTATCAGTTATGTGCTGGTGCACCACCAGCTCTCAGGGGGAAGCTAAACATACAAAATGCAGAAGACTATAAATATTTGAGACAGAGCAATTGTTATTCAATCACAGGTGTTAATGATGCAGAAGAATTTCGCGTAGTCATGGAAGCTCTTGATGTTGTCCACATCAGTAAAGAAGACCAAGAGGCTGTATTTGCGATGCTTGCTGCAGTACTATGGTTAGGAAATGTATCATTTACCGTGATTGATAATGAAAACCATGTTCAAGCTGTAGAAAATGAGGGTCTGTTCCATGTTGCCAAATTGATCGGCTGTGACATTGAAGATCTCAAGTTGGCTCTGTCAACACGCAAAATGAAAGTTCGTAATGAAAATATTGTCCAGAAGTTGACACTGTCACAGGCAGTTGATGCAAGAGATGCTTTGGCAAAGTCAATATATGCATGCCTGTTTGATTGGTTGGTTGAACAAATAAACAAATCACTTGCTGTTGGCAAAAGACGTACTGGCAGATCAATCAGTATTCTAGATATATATGGCTTTGAATCATTCAATAGGAATAGTTTTGAGCAGTTCTGCATAAATTATGCAAATGAAAGATTGCAGCAACACTTCAATCGTCATTTATTTAAGTTAGAACAGGAGGAATATATACAAGATGGCATTGATTGGGCTAAAGTTGAATTTGAAGACAACCAAGACTGCCTCAATCTTTTTGAGAAGAGGCCATTAGGGTTATTATCTCTGTTAGATGAAGAGTGCACTTTTCCAAATGGCACGGATTTGACATTTTCTAACAAGCTTAAACAGCATTTGTGTTCTAATTCGTGTTTCAAAGGAGAAAGAGACCAAGCCTTTACTGTTTGTCATTATGCTGGGGAGGTCACCTATGATACAGCTGGATTTCTGGAGAAAAACAGGGACCTATTGCACTTGGATTCCATCCAACTTCTATCCTCATGTACATGTCGTCTTCCTCAAACATTTGCATCCCATATGCTTACTCAGTCTGATAAGCCAGTAGTTGGCCCCTTACACAAGTCAGGTGGGGCAGATTCTCATAAGCTAAGTGTTGCAACAAAATTCAAGGGCCAATTGTTCCAACTGATGCAACGTTTAGAGAGCACTACTCCTCATTTTATTCGCTGCATTAAGCCCAATAATCTTCAATCACCTGAATCATATCAGCAAGCACTTGTACTGCAACAACTGAGATGCTGTGGGGTCCTGGAAGTGGTTCGAATATCTAGATCAGGCTTTCCAACAAGAATGTCTCACCAAAAGTTTGCCAGAAGATATGGTTTTCTTCTCCTCGATAATGTTGCATCTCAGGATCCACTTAGTGTTTCAGTTGCAATTCTTCATCAGTTTAATATTTTGCCCGAGATGTATCAAGTCGGCTACACAAAGTTATTTTTTCGAACAGGGCAGATTGGTGTGCTTGAAGATACTAGAAACCGTACCCTTCATGGTATTTTACGAGTCCAAAGTTGCTTCAGGGGTTACAAAGCTCGATGTTCTCTCAAAGAGTTCCAGGGAGGAATCACTACTCTGCAGTCATTTATTAGGGGAGCAAAAACCAGAAAAGTATATGCAGCTTTACTTCAGAGACATAGAGCTGCTATTACAATACAAAAGCAGATAAAAGTAGTATTTACAAGAAACAGAACGAGGACAATTCGTGGTGCTGCAACTGTCATACAGTCTGTTATTCGTGGATGGTTGGTCAGGAGGTGCTCAGCAAATATTGCATTTTTGAACTCTGGAGACATGAAGATAAAAGATTCAGATGAGGTTCTTGTCAAGGCATCTTTCCTAGCTGAATTACAGCGTCGGGTACTGAAGGCCGAAGCTGCCCTGAGAGAAAAGGAAGAGGAAAATGACATTCTTCACCAACGTCTGCAACAATATGATAGCAGATGGTCCGAGTATGAATTGAAGATGAAATCCATGGAAGAGGTGTGGCAGAAACAAATGAGATCCCTACAATCCAGCCTTTCCATTGCAAAGAAGAGCCTTGCTATTGATGACTCTGAAAGAAGTTCAGATGCATCTGTTAATGCAAGTGACGAGCGCGATCACAGCTGGGATGTGGGAAGCAATCACAGGCGCCAAGAAAGCAATGGGACGAGATCAACGAGTGCGGGTTTGAGTGTTATAAGTCGGATGGCTGAAGAATTCGAGCAGAGGAGTCAAGTATTTGGTGATGATGCCAAGTTCTTGGTTGAGGTGAAATCGGGTCAAGTGGAAGCAAGTTTGAACCCAGATCAAGAGCTTAGAAGGCTAAAACAGATGTTTGAAGCTTGGAAAAAGGATTATGGGGCAAGACTGCGTGAGACAAAAGTGATTTTAAATAAACTTGGAAGTGAAGATAGTGCACTTGACAAAGTGAAGAAGAGTTGGTGGGGAAGGCGAAACAGTACTAGGATAAATTGA 3504 0.4121 MSLASRVLPALQPMKSLPPDRRENCGDAKLRSSDVIGTSSPIDDALIGEEVSEEAQDRAGDNGLFDEDLAYSGKGVSVEERPSTADEDLESVPLPFQPVSMSSRELRWSDTTPYASKKKLQSWFQLPNGNWELVKIITTSGTESVISLLDGKVLKVKEEILVQANPDILDGVDDLMQLSYLNEPSVLYNLQYRYNQNMIYTKAGPVLVAINPFKKVPLYGNEYIEAYKRKSVESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNARTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCNEGERSYHIFYQLCAGAPPALRGKLNIQNAEDYKYLRQSNCYSITGVNDAEEFRVVMEALDVVHISKEDQEAVFAMLAAVLWLGNVSFTVIDNENHVQAVENEGLFHVAKLIGCDIEDLKLALSTRKMKVRNENIVQKLTLSQAVDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKRPLGLLSLLDEECTFPNGTDLTFSNKLKQHLCSNSCFKGERDQAFTVCHYAGEVTYDTAGFLEKNRDLLHLDSIQLLSSCTCRLPQTFASHMLTQSDKPVVGPLHKSGGADSHKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPESYQQALVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLDNVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGYKARCSLKEFQGGITTLQSFIRGAKTRKVYAALLQRHRAAITIQKQIKVVFTRNRTRTIRGAATVIQSVIRGWLVRRCSANIAFLNSGDMKIKDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYDSRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERSSDASVNASDERDHSWDVGSNHRRQESNGTRSTSAGLSVISRMAEEFEQRSQVFGDDAKFLVEVKSGQVEASLNPDQELRRLKQMFEAWKKDYGARLRETKVILNKLGSEDSALDKVKKSWWGRRNSTRIN* 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3498 1167 MobiDBLite consensus disorder prediction 1035 1057 - -
Lja2g3498 1167 Gene3D - 352 411 - -
Lja2g3498 1167 ProSiteProfiles IQ motif profile. 846 873 IPR000048 GO:0005515
Lja2g3498 1167 SMART MYSc_2a 164 843 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja2g3498 1167 Gene3D - 775 843 - -
Lja2g3498 1167 MobiDBLite consensus disorder prediction 1035 1071 - -
Lja2g3498 1167 Pfam Myosin head (motor domain) 172 830 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja2g3498 1167 ProSiteProfiles Myosin motor domain profile. 170 842 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja2g3498 1167 Gene3D - 896 940 - -
Lja2g3498 1167 Gene3D - 846 895 - -
Lja2g3498 1167 CDD MYSc_Myo8 184 830 IPR036022 -
Lja2g3498 1167 Gene3D - 538 732 - -
Lja2g3498 1167 PANTHER MYOSIN 26 1167 - -
Lja2g3498 1167 MobiDBLite consensus disorder prediction 1 41 - -
Lja2g3498 1167 Gene3D Myosin VI head, motor domain, U50 subdomain 413 710 - -
Lja2g3498 1167 PRINTS Myosin heavy chain signature 200 219 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja2g3498 1167 PRINTS Myosin heavy chain signature 296 323 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja2g3498 1167 PRINTS Myosin heavy chain signature 254 279 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja2g3498 1167 PRINTS Myosin heavy chain signature 528 556 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja2g3498 1167 PRINTS Myosin heavy chain signature 581 609 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja2g3498 1167 ProSiteProfiles IQ motif profile. 916 945 IPR000048 GO:0005515
Lja2g3498 1167 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 26 1167 - -
Lja2g3498 1167 Coils Coil 962 996 - -
Lja2g3498 1167 ProSiteProfiles IQ motif profile. 868 896 IPR000048 GO:0005515
Lja2g3498 1167 Gene3D Kinesin motor domain 173 771 IPR036961 -
Lja2g3498 1167 Pfam IQ calmodulin-binding motif 848 865 IPR000048 GO:0005515
Lja2g3498 1167 Pfam IQ calmodulin-binding motif 919 934 IPR000048 GO:0005515
Lja2g3498 1167 Pfam IQ calmodulin-binding motif 871 887 IPR000048 GO:0005515
Lja2g3498 1167 SMART iq_5 843 865 IPR000048 GO:0005515
Lja2g3498 1167 SMART iq_5 892 914 IPR000048 GO:0005515
Lja2g3498 1167 SMART iq_5 915 937 IPR000048 GO:0005515
Lja2g3498 1167 SMART iq_5 866 888 IPR000048 GO:0005515
Lja2g3498 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 891 IPR027417 -
Lja2g3498 1167 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 117 166 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3498 Lja-Chr2 82481000 82504540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3498 3 1165 Myosins gene family AT1G50360 73.872 0.0 1767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3498 - K10357 gmx:100781736 2075.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3498 2 82481000 82504540 Lja2g3498 2 82481000 82504540 ECH