Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3491 ATGGGGCGTGGAAAGATTGAGATAAAGAGGATCGAGAACACCACCAATAGGCAGGTCACGTTCTCGAAGAGACGCGGTGGGCTGTTGAAGAAGACTCATGAGCTCTCTGTGCTGTGTGATGCTCAGATCGGACTCATCATCTTCTCCAGTAATGGGAAACTCTTCCAGTACTGCACTCATCCCCTTAGCATGGAGCAGATCATAGAAAAGTACGAGAGAAGCAAAGGAATATACGTCAATGGACGTGACCAACAGCGGGAACAATTGTTCCATGAGATGTCAGTGCTGAGGCACGAAACTAGTCGCCTTGAATTTGGAATTCAGCGTTATCTTGGAGAGGACATGCGTGGTCTAAAGTATGAGGAATTGGTTCAACTTGAACATGATTTGGAAAACTCTATTGCAAAGGTTCGAAATCGTCAGAATGAGCTGTTGCAACAACAAACAGACAATCTGAGAAGGAAGGAGAGAATCTTGGAAGATCAAAACAGCACTTTGACCAATTTGGAGCACCGGGCGATGTGGGAGTTTCAGAAGGCTGCTGCAGTGGAAGCACATAAACCTGTTGGAGTAGTGATGGATCAGTTCTCATTCTTTGAACAGCAACCTTCTGCAAGTAGCATCCTGCAACTTTCTGCTTCAGCCCCTCTTCCACCGTTTCACCCTTATCTTCAGCTTCTTATAGCATCTTCAGTGCTATTGCTTGGTGTTCCGGTATAG 720 0.4597 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKTHELSVLCDAQIGLIIFSSNGKLFQYCTHPLSMEQIIEKYERSKGIYVNGRDQQREQLFHEMSVLRHETSRLEFGIQRYLGEDMRGLKYEELVQLEHDLENSIAKVRNRQNELLQQQTDNLRRKERILEDQNSTLTNLEHRAMWEFQKAAAVEAHKPVGVVMDQFSFFEQQPSASSILQLSASAPLPPFHPYLQLLIASSVLLLGVPV* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3491 239 Pfam K-box region 83 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja2g3491 239 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Lja2g3491 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja2g3491 239 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Lja2g3491 239 PANTHER MADS BOX PROTEIN 1 219 - -
Lja2g3491 239 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lja2g3491 239 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 219 IPR031050 GO:0005634|GO:0048316
Lja2g3491 239 ProSiteProfiles K-box domain profile. 86 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja2g3491 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja2g3491 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja2g3491 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja2g3491 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja2g3491 239 Coils Coil 120 172 - -
Lja2g3491 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja2g3491 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3491 Lja-Chr2 82260056 82263779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3491 1 181 MADS-box Gene Family AT5G23260 52.459 2.31e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja2g3491 K-box 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3491 - - gmx:100783876 289.271