Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3490 ATGATCAGCGACACCCTTCTTGTTTATGAGTTTATGACCCGTGGAAGTCTAGACAATCTTCTATTCAGAAGCAAAGTGTTTGAGTTGGAGGATTTGCTGAGAGCCTCTGCGGAGGTTTTGGGAAAAGGGACTTTTGGGACTTCGTATCAGGCGGTTTGGCCTGTGGTGGCTGTGAAGAGATTGAAGGATGTCACCATTTCTGAGAAGGAATTCAAGGAGAAGATTGAACTGGTTGGAGCAATGGATCATGTCAATTTGGTCCCTCTCAGGGCTTACTATTATAGCAGGGATGAGAAGCTTCTTGTTCATGATTACTTTCCAATGGGAAGCTTATCTGCACTTTTGCACAAGACGAACCAAAGGATTTGCTTTTTGAATGTCAGTTACAGTTATAAGAAGTTATAA 405 0.4247 MISDTLLVYEFMTRGSLDNLLFRSKVFELEDLLRASAEVLGKGTFGTSYQAVWPVVAVKRLKDVTISEKEFKEKIELVGAMDHVNLVPLRAYYYSRDEKLLVHDYFPMGSLSALLHKTNQRICFLNVSYSYKKL* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3490 134 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 23 118 - -
Lja2g3490 134 SUPERFAMILY Protein kinase-like (PK-like) 38 119 IPR011009 -
Lja2g3490 134 Pfam Protein tyrosine and serine/threonine kinase 38 122 IPR001245 GO:0004672|GO:0006468
Lja2g3490 134 PANTHER OS05G0588300 PROTEIN 23 118 - -
Lja2g3490 134 ProSiteProfiles Protein kinase domain profile. 34 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g3490 134 Gene3D Phosphorylase Kinase; domain 1 16 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3490 Lja-Chr2 82087573 82089869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3490 24 116 Receptor kinase-like Gene Family AT1G48480 81.250 1.27e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja2g3490 PK_Tyr_Ser-Thr 1.3e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3490 - - lja:Lj0g3v0002709.1 252.677