Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3488 ATGAAACTCTCATTCTCCCTCCCTTCCTCCAAATCCTCCAAGCACACCAACAAGCCCGATCACGGCGGCGACGACGACGGCGCCGGCGCCACCAAACATTTAATCACCGAATTCGACCCTTCCAAACCCCCACCTCTTTCCCAACCCAAAACCCTAATTCCCCCAATCCAAAACCAATGGCGTCCCCTCAAGAAACCCAAGATGAACAACCTCCTCCTCCCCCTCACCGAACCCCAGCACCAACACTCCCTCGCCTTCGAACCTGACACCGCCGCCGCCGCGGAACCCGATTCCGACATCTCCTACGGCCTCAACCTCCGCCGCGACGCCAAGCAGACCGAAGACAACGCCCATGATGATGATGCCGCTGCTCCGCGGCGCCGTTTTCAGCCTGAAGCGATGATGCTGCAGAAGCTTAAGGATGATCTGGAGAAGCTGCCGGATGACCAGGGGTTTGACGAGTTCAAGGATATCCCTGTCGAGGGCTTCGGCGCCGCGCTGCTCGCTGGTTACGGCTGGTCGGAAGGGATGGGGATTGGGAAGAACCCTAAGGAGGATGTTAAGGTGGTGGAGTACAAACGACGGGCTGGAAAGGAAGGATTGGGATTCGTCGGTGATGCACCGGTTTCCCGTCACCAGAAGAAGGAGGGTGGAGCAGCAGAGAATGGCAAGGAAAAGAAAGAGAAGGAGAAGGAGAAGGTTGTGAGAATTGTTGGGGGAAGAGATGCGGGGTTGAAGGGCAGTGTCGTGTCGAGAATTGGGGATGATTTTCTTGTGCTGAAACTCGTAGAGAGCGGGGAGCAAGTGAAGGTCAAGATGGGTGATGTTGCTGAATTGGGTTCTGTGGAAGAAGAGAGGTGCTTGAGAAAATTGAAGGACTTGAAGATTCGGCGTCGCAATGAGGACAAAGGGGCTAAGAGTAAACGTGGAAGGGATGGAGTTGAGGATATGAGAGGGGATCGCGGCAGGGAAGAGCAGGGGAAGAAGCAGGCTTCTTGGCTTACAAGTCATATTCGGGTTAGGGTTGTCAGCCGAGATTTAAAAGGGGGGAGGTTGTATTTAAAGAAAGGAGAGATTTTGGATGTAGTTGGGCCTGCTACTTGTGATCTATCTTTGGATGACAGCAGGGAGATCATTCAAGGAGTGTCTCAAGATCTTCTCGAGACAGTTATCCCGCGACGTGGGGGACCAGTTCTAGTGTTGTCTGGTAAACACAAGGGAGCCTTTGGGAGTCTGGTTGAGAAGGATTTGGACAGAGAAATTGCCATTGTTAGGGATGCTGACACCCATGAGCTGCTCAAAGTCAAACTTGAACAAGTTGCAGAATATATGGGGGACCCAAGCTTATTGGGACATTGA 1359 0.5305 MKLSFSLPSSKSSKHTNKPDHGGDDDGAGATKHLITEFDPSKPPPLSQPKTLIPPIQNQWRPLKKPKMNNLLLPLTEPQHQHSLAFEPDTAAAAEPDSDISYGLNLRRDAKQTEDNAHDDDAAAPRRRFQPEAMMLQKLKDDLEKLPDDQGFDEFKDIPVEGFGAALLAGYGWSEGMGIGKNPKEDVKVVEYKRRAGKEGLGFVGDAPVSRHQKKEGGAAENGKEKKEKEKEKVVRIVGGRDAGLKGSVVSRIGDDFLVLKLVESGEQVKVKMGDVAELGSVEEERCLRKLKDLKIRRRNEDKGAKSKRGRDGVEDMRGDRGREEQGKKQASWLTSHIRVRVVSRDLKGGRLYLKKGEILDVVGPATCDLSLDDSREIIQGVSQDLLETVIPRRGGPVLVLSGKHKGAFGSLVEKDLDREIAIVRDADTHELLKVKLEQVAEYMGDPSLLGH* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3488 452 MobiDBLite consensus disorder prediction 1 62 - -
Lja2g3488 452 MobiDBLite consensus disorder prediction 209 232 - -
Lja2g3488 452 MobiDBLite consensus disorder prediction 14 32 - -
Lja2g3488 452 MobiDBLite consensus disorder prediction 203 232 - -
Lja2g3488 452 Gene3D - 337 391 - -
Lja2g3488 452 SMART G-patch_5 158 204 IPR000467 GO:0003676
Lja2g3488 452 MobiDBLite consensus disorder prediction 102 133 - -
Lja2g3488 452 MobiDBLite consensus disorder prediction 84 133 - -
Lja2g3488 452 MobiDBLite consensus disorder prediction 299 330 - -
Lja2g3488 452 ProSiteProfiles G-patch domain profile. 160 206 IPR000467 GO:0003676
Lja2g3488 452 PANTHER G PATCH AND KOW-CONTAINING 1 450 IPR045166 GO:0000398
Lja2g3488 452 SMART kow_9 391 418 IPR005824 -
Lja2g3488 452 SMART kow_9 228 255 IPR005824 -
Lja2g3488 452 Pfam G-patch domain 147 203 IPR026822 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3488 297 425 C2H2 Transcription Factor Family AT1G55460 28.462 4.93e-07 50.1