Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3487 ATGAGTGCTTCAAAAGTTGGCAGATGTGGAAGAAGAACAAGACCAATGGTTGATAAGAGTTCGACATTTGATTTGGCTGATACAACATGGATCAGTAAGATTCCAGAGTGTCCAGTATATCACCCATCAGAACAGGAGTTTGAGCATCCTTTAGTTTATCTACAGAAGATTGCTCCTGAGGCTTCAAAATATGGTATATGCAAAATTGTTTCACCAATTGCTGCCTCTAACCCAGCTGCTTTTGTCTTAACCAAAGAAGAAAAGGACTTCAAGTTTGAAACAAATGTACAGCCTCTTAGGCTTTCTAAATGGAATGCTAAGGATATAATAACGTTTCCTATGAGAGGAAGAAAATATACATATCATGAATTTGAGGCTCTGGCAAACAAGGTCTTTTTACGCAGATTTCGCAGTTCGGAATGTTGTTCTTCTTCATATGTGGAAAATGAGTTCTGGCATGACATGGTTCATGGAGACAGAGGAACAGTTGAATATGGAGTCAACGTTGAGGGCAGTGCCTTTTCAAGTGATCCCAATGACAGGCTTGGAACAAGCAAATGGAATTTGAAGAATTTCTCACGGCTACAAGAGTGCCCTTTGCGTTTAGTTGACAGGGAAATTCCAGGAATCACTGATCCTATGCTTTATATTGGGATGTTGTTCAGTATGTTTGCATGGCATGTAGAAGACCACTATCTGTACAGCATAAATTATAATCACTCAGGAGCAAATAAAACTTGGTATGGTGTGCCTGGCTATGCAGCCTCTCAATTTGAAAAGATTGTCTTAAACCATGTGTATTGCAAAAAGATCTTAACAAAACATGGAGAGGATGGAGTTTTCCACTTTCTTGCACATAAAACAACCATGTTCCCTCCAAATGTATTGTTACAACATGATGTGACAGTTTACAAGGCTGTGCAGAAGCCAGGAGAGTTTGTCATCACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTCAACTGTGGAGAAGCTGTTAACTTTGCTATTGCTGATTGGTTTCCACTTGGGGCTGCAGCTAGCAAACGTTATGCACATCTAAGAATGCTACCTATAATTCCATATGAGGAACTTCTCTGTAAAGAGGCAATGGTGGTTTACAAGTACTCAAGAGCTAGAGGTTCAAAGAACAAACCTGAAGACATAGCATCTTATGGTGCTATTGTACACTCCTTCTTGCAGCTTATGCAATTTTATAAGTCATCCCTTTTAAGACTGAGAAGTTCAAGAAAGTTGTCAAGCTCTTCATATACATCTGGTACTCTGATATGCAGTCTTTGTCATAAGGATTGTTATGTAGCTTACTTGGAGTGCAAGTATTGCTATTCTCATCCAATTTGCCTTTACCATGATACTGCATCACAGACTTGCTTATGTGGGAGAAAATATACAATTTTTAAGATGAATGAAATGTTGGCATTGGAAGATGCTGTCAGAAGTTTTAAACATGAGAAAGAATGCACGGACACATTATCTCTATCAAGCATATTCTCCTGTAAAAGAAATGAATCCATCAAAGACCTCAAGAATAAAGTGACAATAATGAAGCATTACAGGAACAATGCATCTGCATCAATGATGAGGACCAAAAGACCAAGAATAATTTATAACTTGAGAAAAAGGGAACCAAAGTTGATCATATGA 1671 0.3836 MSASKVGRCGRRTRPMVDKSSTFDLADTTWISKIPECPVYHPSEQEFEHPLVYLQKIAPEASKYGICKIVSPIAASNPAAFVLTKEEKDFKFETNVQPLRLSKWNAKDIITFPMRGRKYTYHEFEALANKVFLRRFRSSECCSSSYVENEFWHDMVHGDRGTVEYGVNVEGSAFSSDPNDRLGTSKWNLKNFSRLQECPLRLVDREIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYNHSGANKTWYGVPGYAASQFEKIVLNHVYCKKILTKHGEDGVFHFLAHKTTMFPPNVLLQHDVTVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAIADWFPLGAAASKRYAHLRMLPIIPYEELLCKEAMVVYKYSRARGSKNKPEDIASYGAIVHSFLQLMQFYKSSLLRLRSSRKLSSSSYTSGTLICSLCHKDCYVAYLECKYCYSHPICLYHDTASQTCLCGRKYTIFKMNEMLALEDAVRSFKHEKECTDTLSLSSIFSCKRNESIKDLKNKVTIMKHYRNNASASMMRTKRPRIIYNLRKREPKLII* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3487 556 ProSiteProfiles JmjC domain profile. 181 354 IPR003347 -
Lja2g3487 556 SMART JmjN_1 36 77 IPR003349 -
Lja2g3487 556 ProSiteProfiles JmjN domain profile. 37 78 IPR003349 -
Lja2g3487 556 SMART cupin_9 181 354 IPR003347 -
Lja2g3487 556 Gene3D Cupin 37 396 - -
Lja2g3487 556 SUPERFAMILY Clavaminate synthase-like 187 372 - -
Lja2g3487 556 PANTHER LYSINE-SPECIFIC DEMETHYLASE 522 555 - -
Lja2g3487 556 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 521 - -
Lja2g3487 556 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 522 555 - -
Lja2g3487 556 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 17 521 - -
Lja2g3487 556 Pfam JmjC domain, hydroxylase 214 337 IPR003347 -
Lja2g3487 556 Pfam jmjN domain 38 70 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3487 Lja-Chr2 81975781 81979900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3487 34 495 JUMONJI Transcription Factor Family AT2G34880 30.624 2.05e-59 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja2g3487 JmjC 5.2e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3487 - - vra:106753585 801.201