Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3478 ATGACAAGGCTAGCATATCTGCATGAACCAGGGGTCCTTCAAAATTTGCAAGTTCGATATGACTTGAATGAAATATATACATACACAGGGAACATATTGATAGCAGTGAACCCTTTTCAAAGGTTACCTCATTTGTCTTCCAATAGTACGATGGCACAGTATAAAGCTGCGGCTTTTGGTGAGCAGAGCCCCCATCCTTTTGCAATTGCAGGTTCTGCATATAGGAAGATGATAAATGAAGGAGCAAGTCAAGCTATTTTGGTTAGTGGAGAAAGTGGAGCTGGTAAAACAGAAAGTACAAAGATGCTTATGCATTATCTTGCCTTTCTGGGAGGGAGAGCAGCAACTGAGGGACGCTCTGTGGAGCAACAAGTTCTGGAGTCCAATCCTGTTTTAGAAGCATTTGGTAATGCAAAGACTGTTAGGAATAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCAGAGGGGAAGAATTTCAGGAGCTGCTATCAGAACTTATTTGTTGGAACGATCCCGCGTATGTCAAGTTTCTGATCCTGAGAGAAATTATCATTGCTTTTATATGCTTTGCGCTGCACCACAAGAGGATGTTAATAGGTACAAATTAGGAAATCCAAGAACATTTCATTACCTTAATCAATCAAATTGCTATGAGCTGGATGGCGTGGATGATTCTAAGGAGTACCTTGATACAAGGAGAGCTATGGATGTCGTTGGGATCAGCTCTGATGAGCAGGATGCCATATTTCGAATAGTAGCTGCTGTACTTCATTTAGGAAACATTGAATTTATCAAGGGAGTGAATGATGAGATGGATTCCTCTGAACCCAAAGATGAAAAATCCCGTTTCCACCTAAAAACTGCAGCTGAACTTTTGATGTGTGATGAAAGTTCCCTTGAAGACTCCTTTTGTAAACGTGTTATGGTGACTCGTGGTGAGGCTATAACAAAATGGCTTGATCCAAACTCTGCAGCTCTCAGTAGAGATGCATTAGCTAAAATAGTTTATTCAAGGCTTTTTGACTGGATTGTGGACAAGATTAACAACTCTATTGGGCAAGATCCAAATTCACAGTACTTAATTGGGGTTCTGGATATATATGGATTTGAGAGTTTCAAGACTAACAGCTTTTTCAACTCATGTAATATTTTATTGATCTTCTGCAGCTTTGAGCAATTTTGTATCAATTTGACAAATGAAAAATTACAGCAACATTTCAACCAGCATGTCTTCAAAATGGAGCAAGAGGAATATACAAAGGAAGAGATTGATTGGAGTTATATAGAGTTTGTTGATAATCAAGATGTTCTTGATCTTATAGAGAAGGTTATGTTTCCAAGATCAACGCATGAAACATTAGCTGAAAAGCTATATCAAACATTTAAGGACAATAAACGCTTCAACAAGCCAAAGTTATCTCGTACTGACTTCACGATCAACCACTATGCCGGTGACGTCACTTATCAAACTGACCTTTTCCTTGATAAGAATAAAGACTATGTTGTTCCAGAGCATGCTGCCCTACTCAGCGCTTCGAAGTGCTCCTTCGTTTCAGGGCTTTTCCCACCTTTATCTGAGGAAACTTCTAAATCTACAAAGTTCTCTTCTGTAGCCTCTCAGTTTAAGCTACAACTGCAATCTTTACTTGAAACACTGAGTGCTACTGAGCCACACTACATTCGTTGCGTAAAGCCAAATAATCTTCTTAAGCCAGGGATATTCGAGAGCAACAATATCTTGCAACAGCTTCGGTGTGGGGGAGTTATGGAGGCAATTAGGATAAGTTGTGCAGGATATCCCACTAGAAAGCACTTTGATGAATTTGTTCAGCGGTTTAGTATCTTGGAACCTAAGGTTCTTAAATCATGCCCTGACGAGGTGACTGCTTGCAAGAGGCTTCTAGACAGAGCGAACCTTAAAGATTATCAGATTGGAAAGACAAAAGTGTTTCTGAGAGCAGGTCAAATGGCAGAACTTGATGCATGTCGTGCTGAGGTCTTAGGAAGATCTGCAAGCATTATTCAGAGAAAAGTTCGCACATTTATTTCTCAGAAACACTTCAGTTTATTAAGATGCTCTGCCATAGAGCTACAAAGGGTTTCTAGAGGTATAAATCCTGTTTATAGTTGTTTGCTACGCATCAAAATCTTGAGTATAGATTTTCTCAATCATTTGTTTTGTACATACTCTTGTGAAATTAATGCAGGACAACTTGCACGCCATCAGTATGAGTGCATGAGGAGGGAAGCAGCTTCTTTGAAAATCCAAAAACACTTCCGCATGCATCTTTCCCAAAATGCTTACAAAACTATTTATGCCGCAGCTGTTTGTATTCAAACTGGTATGCGAGGGATGGATGCTAGAAATAACCTTAGATTCCGGAGGCGGGCACATGCTGCAATTGTTATTCAGGGTTACTACAGAGGTTATTTAGCTCGTACATATTTCCGAAGGCTAAAGAAAGCAGCAATTGTTGCACAATGTTCCTGGAGGAGAACCATTGCACGTAGAGAACTTCGAAAGCTTAAAATGGCTGCTAAGGAAGCCAAGGCTCTAGAAGCTGCCAAAATTAATCTAGAAAAGCAAGTTGAAGAACTAACCATGACCGAGACACAGGAAAACGAAAAATTACAACATGCTTTGCGAGAGATGGAGCTTCAATTCCAAGAAACTAAGGCAACACTAATCCAGGAGACACAGGAAAATGAAAGATTACAACATGCGTTGCGAGAGATGGAGCTTCAGTTCCAAGAAACTAACTCAACACTAATTCAGAAACGTGAGGCTACCAACAAAGAAGCTGAGAAAACTCCAACTATACAAGATTTTTCTGTTAATGTTGTTGACAATGAATTGATTGATAAGCTTACTGCTGAAAATGAAAAACTTAAGGAGATGGTTAATTCATTGGAAAAGAAAACTACACAGGAGTTTCCTGTTAATGTTACTGAAAATGAAGTAATCAATAAGCTTAGTTCTGAAAATGAACATCTCAAGGATCTTGTTGGTTCATTAGAAAGAAAATTTGATGAAACAGAGAGGAAATATGAAGAAAGTAGCAGGCTTAGTGAAGAGCGCATGAATCAAATTATAGAGACGGAATCAAAGATCATTGATCTAAAGACCAATATGCAGAGGCTTGAAGAAAAACTCTCTGATATGGAAACTGAGAATCAAATTTTGCGGAAGCAATCACTGCTTAGTTCATCATCCCAGAGAATGTCAGGAAAATTTACACCTGCTACCGCTCCGCCTTTGGAAAATGGTCATCAGGCACCAGCAAAGACATTTGGTTCAGAAGTGAGGAGATCTCAAATGGAGAAGCATCATGAGAGTGTTGATGCTCTATTCAATTGTGTGGCAAAAGATCTTGGGTTCTCAGAAGGAAAACCTGTTGCAGCATTTACAATTTATAACTGTCTTCTACATTGGAGATTTTTTGAAGCAGAAAAGACAAGTATATTTGATCGTCTTATTCAGCTGATTGGTTCTGCAATAGAGGATCAGGACAATCATGATTCTATGGCTTATTGGTTGTCCAATACGTCTGCATTGTTTTTCCACCTTCATCAATGTCTAAAAGTACCTACATCAACATCAGGGAAGCCACCAACTCCAAATCCAAATCCAACGACATTTATGGCAAAGATTACCAGGAGTTTCCGCTCATCTTCCAACAGCCTTTCCAGTAATGCAATGGATGTAGAGAATCTGGTTGAGGCCAAGTATCCAGCTTTGCTTTTCAAGCAACAGCTTGCAGCTTATGTCGAAACAATATATGGAATTATTCGAGAAAATTTGAAGAAAGACTTGTCACCTCTGCTTTCTTCTTGCATTCAGGCTCACAGAAAGCCAAGTGACAATGGCCATCCAGCTGGTTCTTGGTTTAGCATAATTGAGTGCCTTAATAAATTTCTCAAGATTCTGAAAGAAAATCATGTGCCTCCAGTTCTAGTTCAGAAGATATTCAATCAAATTTTTCAATATATCAATATGGAACTGTTTAATAGCCTTCTTTTACATCGAGAAAACTGCACATTCACCAATGGAGAACATGTTAAAGCAGGGTTGGCCGAATTAGAGCTATGGTGTAGTGACGTAACGGAGGAGTACGCTGGCTCATCTTTGGACGAACTCAAGCATGCTAGGCAAGCAGTTAGATTCTTGGTTACACAAGAGAAGGATGGACTTTTGTATGATGATCTTACAAATGATCTCTGCCCTGTCCTGAGTTCTAATCAGCTCTATAGAATATGTACACTTTACTGGGATGTCAATGACAATACGCAAAATGTATCATCGGATGTCACTACTAGATTGAAGCTTCTAATGACAGATGGTGTGGAAGATGATGACAAATCGTTCTTGTTGGAAGACAATTCATGTCATCCTATTAACATTGAAGAGTTTCCTAAGACTCGTCTAGATAAGGCCGCTGCCAGAGTAAAACCTCCTGCAGAACTTCTTGAGAAAGCATCATTCCAATTCTTACATGATTATTGTTAG 4521 0.3922 MTRLAYLHEPGVLQNLQVRYDLNEIYTYTGNILIAVNPFQRLPHLSSNSTMAQYKAAAFGEQSPHPFAIAGSAYRKMINEGASQAILVSGESGAGKTESTKMLMHYLAFLGGRAATEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPQEDVNRYKLGNPRTFHYLNQSNCYELDGVDDSKEYLDTRRAMDVVGISSDEQDAIFRIVAAVLHLGNIEFIKGVNDEMDSSEPKDEKSRFHLKTAAELLMCDESSLEDSFCKRVMVTRGEAITKWLDPNSAALSRDALAKIVYSRLFDWIVDKINNSIGQDPNSQYLIGVLDIYGFESFKTNSFFNSCNILLIFCSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKVMFPRSTHETLAEKLYQTFKDNKRFNKPKLSRTDFTINHYAGDVTYQTDLFLDKNKDYVVPEHAALLSASKCSFVSGLFPPLSEETSKSTKFSSVASQFKLQLQSLLETLSATEPHYIRCVKPNNLLKPGIFESNNILQQLRCGGVMEAIRISCAGYPTRKHFDEFVQRFSILEPKVLKSCPDEVTACKRLLDRANLKDYQIGKTKVFLRAGQMAELDACRAEVLGRSASIIQRKVRTFISQKHFSLLRCSAIELQRVSRGINPVYSCLLRIKILSIDFLNHLFCTYSCEINAGQLARHQYECMRREAASLKIQKHFRMHLSQNAYKTIYAAAVCIQTGMRGMDARNNLRFRRRAHAAIVIQGYYRGYLARTYFRRLKKAAIVAQCSWRRTIARRELRKLKMAAKEAKALEAAKINLEKQVEELTMTETQENEKLQHALREMELQFQETKATLIQETQENERLQHALREMELQFQETNSTLIQKREATNKEAEKTPTIQDFSVNVVDNELIDKLTAENEKLKEMVNSLEKKTTQEFPVNVTENEVINKLSSENEHLKDLVGSLERKFDETERKYEESSRLSEERMNQIIETESKIIDLKTNMQRLEEKLSDMETENQILRKQSLLSSSSQRMSGKFTPATAPPLENGHQAPAKTFGSEVRRSQMEKHHESVDALFNCVAKDLGFSEGKPVAAFTIYNCLLHWRFFEAEKTSIFDRLIQLIGSAIEDQDNHDSMAYWLSNTSALFFHLHQCLKVPTSTSGKPPTPNPNPTTFMAKITRSFRSSSNSLSSNAMDVENLVEAKYPALLFKQQLAAYVETIYGIIRENLKKDLSPLLSSCIQAHRKPSDNGHPAGSWFSIIECLNKFLKILKENHVPPVLVQKIFNQIFQYINMELFNSLLLHRENCTFTNGEHVKAGLAELELWCSDVTEEYAGSSLDELKHARQAVRFLVTQEKDGLLYDDLTNDLCPVLSSNQLYRICTLYWDVNDNTQNVSSDVTTRLKLLMTDGVEDDDKSFLLEDNSCHPINIEEFPKTRLDKAAARVKPPAELLEKASFQFLHDYC* 1507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3478 1506 SMART iq_5 800 822 IPR000048 GO:0005515
Lja2g3478 1506 SMART iq_5 752 774 IPR000048 GO:0005515
Lja2g3478 1506 SMART iq_5 775 797 IPR000048 GO:0005515
Lja2g3478 1506 SMART iq_5 823 845 IPR000048 GO:0005515
Lja2g3478 1506 SMART iq_5 671 693 IPR000048 GO:0005515
Lja2g3478 1506 Coils Coil 958 978 - -
Lja2g3478 1506 Gene3D - 603 712 - -
Lja2g3478 1506 Gene3D - 186 244 - -
Lja2g3478 1506 SMART MYSc_2a 1 670 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja2g3478 1506 CDD MyosinXI_CBD 1112 1473 IPR037975 GO:0007015
Lja2g3478 1506 PRINTS Myosin heavy chain signature 26 45 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja2g3478 1506 PRINTS Myosin heavy chain signature 365 393 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja2g3478 1506 PRINTS Myosin heavy chain signature 83 108 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja2g3478 1506 PRINTS Myosin heavy chain signature 431 459 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja2g3478 1506 PRINTS Myosin heavy chain signature 130 157 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja2g3478 1506 Coils Coil 993 1027 - -
Lja2g3478 1506 PANTHER MYOSIN HEAVY CHAIN 1 709 - -
Lja2g3478 1506 PANTHER MYOSIN HEAVY CHAIN 983 1503 - -
Lja2g3478 1506 PANTHER MYOSIN HEAVY CHAIN 739 888 - -
Lja2g3478 1506 Coils Coil 837 927 - -
Lja2g3478 1506 Coils Coil 1035 1069 - -
Lja2g3478 1506 Pfam Myosin head (motor domain) 1 657 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja2g3478 1506 Gene3D Kinesin motor domain 1 599 IPR036961 -
Lja2g3478 1506 ProSiteProfiles Myosin motor domain profile. 1 669 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja2g3478 1506 CDD MYSc_Myo11 10 657 IPR036018 -
Lja2g3478 1506 PANTHER MYOSIN 1 709 - -
Lja2g3478 1506 PANTHER MYOSIN 983 1503 - -
Lja2g3478 1506 PANTHER MYOSIN 739 888 - -
Lja2g3478 1506 ProSiteProfiles IQ motif profile. 801 827 IPR000048 GO:0005515
Lja2g3478 1506 Pfam IQ calmodulin-binding motif 826 845 IPR000048 GO:0005515
Lja2g3478 1506 Pfam IQ calmodulin-binding motif 803 822 IPR000048 GO:0005515
Lja2g3478 1506 Pfam IQ calmodulin-binding motif 755 774 IPR000048 GO:0005515
Lja2g3478 1506 ProSiteProfiles IQ motif profile. 778 805 IPR000048 GO:0005515
Lja2g3478 1506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 709 IPR027417 -
Lja2g3478 1506 Gene3D - 750 802 - -
Lja2g3478 1506 Gene3D - 803 853 - -
Lja2g3478 1506 Gene3D - 375 560 - -
Lja2g3478 1506 ProSiteProfiles Dilute domain profile. 1161 1451 IPR002710 -
Lja2g3478 1506 ProSiteProfiles IQ motif profile. 824 853 IPR000048 GO:0005515
Lja2g3478 1506 MobiDBLite consensus disorder prediction 1073 1110 - -
Lja2g3478 1506 ProSiteProfiles IQ motif profile. 753 779 IPR000048 GO:0005515
Lja2g3478 1506 Pfam DIL domain 1327 1429 IPR002710 -
Lja2g3478 1506 Gene3D Myosin VI head, motor domain, U50 subdomain 246 538 - -
Lja2g3478 1506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 748 852 IPR027417 -
Lja2g3478 1506 SMART DIL_2 1326 1433 IPR002710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3478 Lja-Chr2 81851618 81871744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3478 1 1503 Myosins gene family AT5G43900 59.858 0.0 1798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3478 K10357 - gmx:100788123 2281.91