Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3476 ATGGCACTGCAGCATGGCATGCCAATGTACCTCTCTCCAAGTTTTGGACACTTCGGTTTCCACCTCCAGCCTCCACCCTCCGGCCTCAGCCCCAACCAGCAGGCAAAGCCCTCCTCTTCGGCCAAAAGGCCCGTCGGCCGGCCACCGGGCTCCAGGAACAAGCCAAAGCCCTCGATGGTCATCTCCCAGGACAACTACGACATGATGCCAGCAATCATCGAGGTCGGAGCTGGCAAGGACGTCATGGAGGTGGTGGCCCAGCTTGCCCGCCTCCGAAACTCCAGCATTATGGTGGTGCATGCGGCGGGCACTATTTCCAACGTGACTCTTAGGAACCCTAAGGCCGAAGCCCCTTATTCTTTCATCGCCCATGGACCCTTTGTTTTGTTGGGCCTCTCTGGCTCTTATTTGATACAATCTTCTGGTGGCGTTGGCTTTCCTTCTTCTCAGCCATCGTTCATCCCAAATCTATCTTCCTCTGTGATTCACCCCACCTTTACGATCTCCATCTCTAGCTTGCAGGGAGAAGAATTTAGTGGGATCGTTGATGGGAAGGTCATGGCTGGGAATAATGGGGTCACTATTACGGCCATGTTTGTCCAGAACCTTGAGTATCATAGTTTTAGTGTCGTTACTGAAGGCGATATTATGGAAGAAGATATTGATAACCCTCGTGGTAGTGGTGTTAGTGGTGCTCATGAGGGTGCTAGTGGTTTTGAAGGCGGTGCTTGTGCTAGTGGTTTTGGCATGCCTGGTTTTATACAAAATTGA 771 0.5201 MALQHGMPMYLSPSFGHFGFHLQPPPSGLSPNQQAKPSSSAKRPVGRPPGSRNKPKPSMVISQDNYDMMPAIIEVGAGKDVMEVVAQLARLRNSSIMVVHAAGTISNVTLRNPKAEAPYSFIAHGPFVLLGLSGSYLIQSSGGVGFPSSQPSFIPNLSSSVIHPTFTISISSLQGEEFSGIVDGKVMAGNNGVTITAMFVQNLEYHSFSVVTEGDIMEEDIDNPRGSGVSGAHEGASGFEGGACASGFGMPGFIQN* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3476 256 Pfam Plants and Prokaryotes Conserved (PCC) domain 70 197 IPR005175 -
Lja2g3476 256 MobiDBLite consensus disorder prediction 21 61 - -
Lja2g3476 256 CDD DUF296 72 189 IPR005175 -
Lja2g3476 256 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 35 228 - -
Lja2g3476 256 ProSiteProfiles PPC domain profile profile. 65 222 IPR005175 -
Lja2g3476 256 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 228 IPR014476 GO:0003680
Lja2g3476 256 MobiDBLite consensus disorder prediction 26 40 - -
Lja2g3476 256 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 186 - -
Lja2g3476 256 Gene3D - 71 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3476 Lja-Chr2 81797198 81797968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3476 20 213 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.673 1.01e-23 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3476 - - lja:Lj2g3v1280070.1 272.707