Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3466 ATGAGTTCCAACAATTCCAAACAAACCTATCAACTTCCCACAGAGGTGGTAGCAAAGCCCGATGATGCTTACCTCTCTGCTTTGTCACTGTGTTTTAGTAGAATCTTCCCTGCAATCTTAAATGCTGCTATTGATCTCAATTTGTTTGAGATCATAGCGGAGGCGCAGAGTACTTCATGCGGAGCAAGCTTGTCTGCCTCTGAGATTGCTTCTCTGCTTCCAAATCAACACTCTGAATTGGCAAACAGGCTTGACCGCATTTTACCTGTGCTGGCCAGTTATTCTCTTCTTACTTGCTCCATTCGCACCGATGAAGAGGGTAAGAGAGAAAGAGTTTATGCTCTCTCACCCGTTGGTGATTACTTTGTTTGTGATAGCAGAGGAGGCTCTTTTAGTTCACTATCAATTATAATTCATCGAGGATTTCAAGATGTTTGGAATGATATAAAGGATGCAATTGTGGATCCTAGTGACAACAATCATTTCCAAAAAGTCTATGGAATGTCAACTTATCAATATATGGAGACAAATGAAGAGCTTAACAACATTTTCATCAAAGCAATAGCCCAAATCAGCTCATTGGAAATGACAAGGATACTTAAACTTTATCAAGGTTTCAAAGGAGTATCAACAGTTGTTGATGTAGCAGGTGGTGTTGGGCAGGTCTTAAAACAGATCATCTCTGAGCATCCTTCTATAAAAGGAATTAATTTAGATTTGCCACAAGTGATTCAACACGCCCAACCTCATCCAGGGATAAAACATGTTGGAGGAGATATGTTTGAAAGTGTTCCAGAAGGGGACGCCATTTTATTGAAGCAAGTATGTCACAATTGGTCAGATGAAGAATGCATAAAGTTGTTAAGAAATTGCCACAAAGCTTTGCCAGAAGAAGGAAAGGTGATTATTATAGAATATATAATTCCAGAAGTCCCAGATTCAAGCTTAATATCCAAGAATACATGTATTGCCGACAATTTCATGTTTGCAGTAACTAGTGGAAAGGAAAGAACCGAGAAGGAATTCGTCAAATTATGCACGAATTCTGGATTTTCCAGATTTCATGTTGCTTGCCGTGATTTGTCGGTTACGTCAAGAGTTATGGAGTTTTATAAATAG 1119 0.3905 MSSNNSKQTYQLPTEVVAKPDDAYLSALSLCFSRIFPAILNAAIDLNLFEIIAEAQSTSCGASLSASEIASLLPNQHSELANRLDRILPVLASYSLLTCSIRTDEEGKRERVYALSPVGDYFVCDSRGGSFSSLSIIIHRGFQDVWNDIKDAIVDPSDNNHFQKVYGMSTYQYMETNEELNNIFIKAIAQISSLEMTRILKLYQGFKGVSTVVDVAGGVGQVLKQIISEHPSIKGINLDLPQVIQHAQPHPGIKHVGGDMFESVPEGDAILLKQVCHNWSDEECIKLLRNCHKALPEEGKVIIIEYIIPEVPDSSLISKNTCIADNFMFAVTSGKERTEKEFVKLCTNSGFSRFHVACRDLSVTSRVMEFYK* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3466 372 Pfam Dimerisation domain 39 92 IPR012967 GO:0046983
Lja2g3466 372 Gene3D - 3 122 IPR036388 -
Lja2g3466 372 PIRSF O-mtase 4 372 IPR016461 GO:0008168
Lja2g3466 372 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 5 372 - -
Lja2g3466 372 Gene3D Vaccinia Virus protein VP39 129 372 IPR029063 -
Lja2g3466 372 Pfam O-methyltransferase domain 146 352 IPR001077 GO:0008171
Lja2g3466 372 PANTHER O-METHYLTRANSFERASE 5 372 IPR016461 GO:0008168
Lja2g3466 372 SUPERFAMILY "Winged helix" DNA-binding domain 21 125 IPR036390 -
Lja2g3466 372 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 372 IPR016461 GO:0008168
Lja2g3466 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 136 368 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3466 Lja-Chr2 81593479 81596019 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3466 14 363 Monolignol Biosynthesis Gene Families AT5G54160 45.170 1.51e-104 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3466 - - gmx:100793053 504.982