Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3465 ATGTTTGATCAAGTATTGCGAGTATATGCGTTAAATATTCGACAAAATTTACTCCGGTTGAAATGGCTGAAGAAGAATTTTGGCAGCGCGTGCTTAAAGTGTGAAATCAAATCAAAGAAGATACCTTGGTCCAAAATTTTTATCGCTGCAGGTGTAGTTGTTGGTTCATCTGTGCTGGTGTTTTTACTAGGTGTCATCATTCGAACATATCACTATTTTAGGATAAAAAGCGGTGATCAGACAAGGGTCGATAATTTTTTAAAGGATTACAGGGCTATGGAGCCAACCAGATTCTCTTATGCTGATATCAAGAGAATCGCACACCAATTTAAGGAAAAGCTTGGTGAAGGAGCTCATGGAGCTGTCTACAAAGGAAAACTATCCACCCAAATTCTGGTTGCTGTGAAGATCCTCAACAACACAGAGGCAGATGATGGGACAAATTTCATCAATGAAGTGGGAACCATGGGCAAAATCCACCATGTCAATGTTGTTCGCTTGCTTGGCTTCTGTGCTGATGGGTTTCACAAAGCTCTAGTTTATGACTTTTTCCCAAATGGATCACTGCAGAATTTCATCTCTGCACCAAACAAGGATAATAACACCTTCCTTGGATGGGAAAAGTCACAAGAAATTGCTCTAGGCATAGCCACAGGAATTGATTATCTTCACCGAGGCTGTGAGCAAAGAATTCTTCATTTTGACATCAATCCTCATAATGTCCTACTTGATGAAACTTTCACTCCAAAATTCTCAGACTTTGGTTTAGCAAAGTTGTGTTCCAAAAATCGAAGTACTGTGTCAATGACGGCAGCCAGGGGAACACTAGGCTACATGGCACCGGAAATTTTTTCTAGAAACTTTGGCAATGTGTCTTACAAGTCTGATATCTACAGCTATGGGATGTTGTTGCTAGAGATGGTTGGAGGAAGAAAGAATATTGTGAACACAAGTCAAGAAAATAATAATGTACAAGTTCTGTATCCAGATTGGATACACGGATTGCTTGAAGGAAGGGACATGCATGTCCCTATTGATGAAGAGGGTGATTTTGAAATTGCAAAGAAACTGGCCATTGTGGGACTTTGGTGCATCCAATGGAATCCTTTGCATCGTCCCTCCATGAAGTCTGTATTACAGATGCTCCAAGGAGAGGGAGGTAAGTTAAAAGTTCCCACCAATCCTTTCCAGCCAAAAGCCTCTACTAGTACAAGCACTAATACTACTGTTGCTGAAAAACGTCTGAATTTAGAGTTGGAAGTGATTCAAGAACTGGATTGA 1281 0.4044 MFDQVLRVYALNIRQNLLRLKWLKKNFGSACLKCEIKSKKIPWSKIFIAAGVVVGSSVLVFLLGVIIRTYHYFRIKSGDQTRVDNFLKDYRAMEPTRFSYADIKRIAHQFKEKLGEGAHGAVYKGKLSTQILVAVKILNNTEADDGTNFINEVGTMGKIHHVNVVRLLGFCADGFHKALVYDFFPNGSLQNFISAPNKDNNTFLGWEKSQEIALGIATGIDYLHRGCEQRILHFDINPHNVLLDETFTPKFSDFGLAKLCSKNRSTVSMTAARGTLGYMAPEIFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNIVNTSQENNNVQVLYPDWIHGLLEGRDMHVPIDEEGDFEIAKKLAIVGLWCIQWNPLHRPSMKSVLQMLQGEGGKLKVPTNPFQPKASTSTSTNTTVAEKRLNLELEVIQELD* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3465 426 SUPERFAMILY Protein kinase-like (PK-like) 87 382 IPR011009 -
Lja2g3465 426 PANTHER RUST RESISTANCE KINASE LR10-RELATED 2 425 IPR045874 GO:0004672
Lja2g3465 426 ProSiteProfiles Protein kinase domain profile. 108 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g3465 426 Pfam Protein kinase domain 110 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g3465 426 Gene3D Phosphorylase Kinase; domain 1 82 183 - -
Lja2g3465 426 ProSitePatterns Protein kinases ATP-binding region signature. 114 136 IPR017441 GO:0005524
Lja2g3465 426 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 425 - -
Lja2g3465 426 Gene3D Transferase(Phosphotransferase) domain 1 184 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3465 Lja-Chr2 81519154 81521409 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3465 47 421 Receptor kinase-like Gene Family AT1G66910 41.579 5.68e-99 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja2g3465 Pkinase 7.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3465 - - lja:Lj0g3v0145559.1 839.336