Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3462 ATGAGTTCCAATTTCAAACAAAATGAACTTCCCACAGAGGCAGCAAATGTCAATGATGCCTACCCCATTGCTCTGTCACTATGTTTCAGTCGAATCTTTTCTGCAATTTTGAATGCTGCTGTCGATCTCAATTTGTTTGATATCATTGCAAAGGCACAAAATTCTAGTGGTTCAAGCTTGTCTGCTTCTGAAATTGCTTCACAGCTTCCATTTCAACATTCAGAATTGGTTACTAGGCTTGAAAGGATGCTACCAGTGTTGGCTAGTTTTTCTCTGTTAACTTGCTCCATTCGTACCACTGAAGATGGTAGTAGAGAAAGAGTTTATGCTCTCTCACCAGTTGGTGATTACTTTGCAATTGAGAACATTGGAGGCTCTCTTGGTCCCCTCTCAACCTTAGTGCATCGAGGATATTGTGATATTTGGAATGATGTGAAGGATGCAATTGTAGATCCTAATAACAATAACCACTTCATAAATGTTTACGGATTAGAGCCTTTTCAATATATGGAGAAAAATAAAGAGTTGAACCACTTATTTAACAAAGGAGCGGCCCTTTCTGGCCTATTAGAAATGAAAGAGATCCTTAAAATATATAAAGGATTTGTGGGAGTATCGACATTGGTTGATGTGGGTGGTGGAGTAGGTCAGGTCTTAGAACAAGTTATCTCTCAATATCCTTCAATGAAAGGAATTAACTTTGATTTGCCTCAAGTGATTCAACATGCATCACCTCATCCAGGGATAGAACATGTATCGGGAGATATGTTTGAAAGTGTTCCAAATGGTGATGCCATTTTACTTAAGCGTGTATGTCATAATTGGCCAGATGAAGATTGTGTGAAGGTTTTGAAAATTTGCCATAAAGCTTTGCCTGAGCATGGAAAGGTGATTATTGTGGACACTATATATCCAGAAGTTCCAAACTCCAGCATTACATCTCAATGTGTCAGTGTTGTTGACAATCTCATGTTTTTAGTACATGGCGCAAAGGAAAGAACTGAGAATGAATTCCGAAGCCTGTGCTCTAGCTCTGGATTTTCCAAATTTCATGTTGCGTCTAGTACTGGTTCCTCATCTGTAATAGGAGTGATGGAATTTTATAAATAA 1110 0.3847 MSSNFKQNELPTEAANVNDAYPIALSLCFSRIFSAILNAAVDLNLFDIIAKAQNSSGSSLSASEIASQLPFQHSELVTRLERMLPVLASFSLLTCSIRTTEDGSRERVYALSPVGDYFAIENIGGSLGPLSTLVHRGYCDIWNDVKDAIVDPNNNNHFINVYGLEPFQYMEKNKELNHLFNKGAALSGLLEMKEILKIYKGFVGVSTLVDVGGGVGQVLEQVISQYPSMKGINFDLPQVIQHASPHPGIEHVSGDMFESVPNGDAILLKRVCHNWPDEDCVKVLKICHKALPEHGKVIIVDTIYPEVPNSSITSQCVSVVDNLMFLVHGAKERTENEFRSLCSSSGFSKFHVASSTGSSSVIGVMEFYK* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3462 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 135 361 IPR029063 -
Lja2g3462 369 SUPERFAMILY "Winged helix" DNA-binding domain 18 118 IPR036390 -
Lja2g3462 369 PANTHER O-METHYLTRANSFERASE 1 369 IPR016461 GO:0008168
Lja2g3462 369 Gene3D - 32 195 IPR036388 -
Lja2g3462 369 PIRSF O-mtase 1 369 IPR016461 GO:0008168
Lja2g3462 369 Gene3D Vaccinia Virus protein VP39 177 353 IPR029063 -
Lja2g3462 369 Pfam Dimerisation domain 36 88 IPR012967 GO:0046983
Lja2g3462 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 369 IPR016461 GO:0008168
Lja2g3462 369 Pfam O-methyltransferase domain 142 348 IPR001077 GO:0008171
Lja2g3462 369 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3462 Lja-Chr2 81416372 81418073 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3462 1 352 Monolignol Biosynthesis Gene Families AT5G54160 43.099 1.98e-95 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3462 - - lja:Lj0g3v0124669.1 540.036