Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3458 ATGAGTGCCAATTCCAAACAAAATCAGCTTCCGACAGAAGTAGTAGAGGTTGATAATGCTTACCCCACTGCTTTGATGTTATGTTTCAGTCGAATCTTTCCTGCAATTCTGAACGCTGCAGTTGATCTCAACTTGTTTGAAATCATAGCTAAAGCGGAAAGCCCATATGGTTCAAGCTTTTCTGCCTTTGAAATTGCTTCTCTACTTCCCTACAAACACTCTGAATTAGTTACAAGGCTTGTGCGCATGTTACCTATGCTAGCTAGTTATTCTCTTCTAACTTGTTCCCTTCGCACCAATGATGATGGTACGAGAGAACAAGTTTATGCACTCTCACCCGTTGGTGAATACTTTGCATTTAATAACCATGGAGGAGGCTCTTTAGGTCCCGCTTTAACCTTATTTCATCGAGGTTATCAATATATTTGGGATAATGTAAAGGATGCGATTATAGACCCTCGTAACAATAATCAATTTCAAGAAGTTCATGGGTTGCCCCCTTTTCCATATATGGAGAAAGATAAAAAGTTGAATCATATATTTAATGAAGCAATGGCACATGCTGGTCCGTTAGAAATGAAACAGATCCTCAAAATATATAAAGGATTTGAGGGAGTATCAACATTGGTTGATGTTGGTGGTGGAGTAGGGCATGTCTTAAAACAAGTTATCTCTGAATACCCTTCAATAAAAGGGATTAATTTTGATTTGCCTCAAGTGATTCAAAATGCACCACCTCATCTAGGGGTAGAGCATATTGAAGGAGAAATGTTTGAAAGTGTTCCAAAGGGTGATGCCATCTTACTAAAGCGTATATGTCACAACTGGTCCGATGAAGAATGTGTGATGTTTTTAAAAAATTGCTACAAAGCTTTGCCAACATGTGGAAAGGTGATTATTATAGATTGTATAATTCCAGAAGTTCCAAACCCGAGCATTATGTCAAAGTATGCATATGCTTTTGACATGGTCATGTTTTTAGTACATGGTGGAAAGGAAAGAACTGAAAATGAATTCCGAAGCTTATGCTCTAGCTCTGGATTTTCCAAATTTCATGTTGCGTGCAGTGGTATCTCGTCTACGTTAGGAGTGATGGAATTTTATAAATAA 1110 0.3793 MSANSKQNQLPTEVVEVDNAYPTALMLCFSRIFPAILNAAVDLNLFEIIAKAESPYGSSFSAFEIASLLPYKHSELVTRLVRMLPMLASYSLLTCSLRTNDDGTREQVYALSPVGEYFAFNNHGGGSLGPALTLFHRGYQYIWDNVKDAIIDPRNNNQFQEVHGLPPFPYMEKDKKLNHIFNEAMAHAGPLEMKQILKIYKGFEGVSTLVDVGGGVGHVLKQVISEYPSIKGINFDLPQVIQNAPPHLGVEHIEGEMFESVPKGDAILLKRICHNWSDEECVMFLKNCYKALPTCGKVIIIDCIIPEVPNPSIMSKYAYAFDMVMFLVHGGKERTENEFRSLCSSSGFSKFHVACSGISSTLGVMEFYK* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3458 369 PIRSF O-mtase 1 369 IPR016461 GO:0008168
Lja2g3458 369 PANTHER O-METHYLTRANSFERASE 1 369 IPR016461 GO:0008168
Lja2g3458 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 369 IPR016461 GO:0008168
Lja2g3458 369 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 369 - -
Lja2g3458 369 Gene3D Vaccinia Virus protein VP39 130 369 IPR029063 -
Lja2g3458 369 Gene3D - 1 118 IPR036388 -
Lja2g3458 369 Pfam O-methyltransferase domain 143 349 IPR001077 GO:0008171
Lja2g3458 369 Pfam Dimerisation domain 36 88 IPR012967 GO:0046983
Lja2g3458 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 135 355 IPR029063 -
Lja2g3458 369 SUPERFAMILY "Winged helix" DNA-binding domain 17 119 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3458 Lja-Chr2 80999403 81001831 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3458 1 362 Monolignol Biosynthesis Gene Families AT5G54160 44.505 4.46e-103 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3458 - - gmx:106794104 505.753