Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3457 ATGTCTACTGTTGTTCCACTTCCCTCAAACCTTGCATTCTCTGATGCAAGCCCTGAATGGATGAACAAAGCAGACAATGCATGGCAGCTCACAGCTGCAACACTGGTGGGCCTGATGAGTATTCCGGGGCTCATGATCATGTACGGCGGAGCAGTGAAGAAGAAATGGGCAGTGAACTCAGCATTCATGGCGCTCTACGCTTTCGCCTGCGTGATTTTCTGCTGGGTTTTCTGGGGTTACAGAATGTCTTTTGGTGACAAACTTTTCCCTTTCTTGGGAAAACCTGCAGTTGCACTTGATGAGAAGTATCTTTTCAAGCCAGCTTTTTTTGGGATGTTTCCAAATGTAACAATGGTGTACTTTCAGGGTGTGTTTGCTGCAATCACTGAGATTTTGCTAGCAGGGGCTGTGTTGGGGCGCATGAACTTTTATGCTTGGATGCTGTTTGTGCCTTTGTGGCTCACTTTCTCATACACCTTCGTAGCATTCAGCATTTGGTGTCCTGCTGGCTTTTTATCTAAAATGGGGTTGATAGATTACTCAGGTGGATATGTCATCCATTTGTCTTCAGGGGTTGCTGGATTCACAGCTGCATATTGGGTTGGGCCACGCCTGAACAAGGACAGGGAAAGGTTCCCACCAAACAACATCCTTCTTATGCTAGCAGGAGCAGGGTTGCTTTGGATGGGATGGACAGGGTTCAATGGAGGAGACCCTTACACAGTGAGCATGGATGCTTCATTGGCTGTCTTAAACACACATGCTTGCACTGCTACCAGCTTGCTTACTTGGGTCATCCTTGATGTCATCTTTTTCAGAAAGCCTTCTGTAATTGGAGCTGTTCAAGGCATGATCACTGGTTTGGTTTGCATCACCCCTGCTGCAGGGGTTGTTCAAGGATGGGCAGCACTTATAATGGGGGTTTTCTCTGGTTCAATTCCATGGTTTACCATGATGGTAATCCACAAGCGATCAAAGCTTCTACAGAAGGTGGATGATACAATGGCAGTGTTGCACACTCATGCCATTGCAGGAAGTCTTGGAGGAATCCTCACTGGACTCTTTGCGGAGCCAAGACTTAACTACTTGTTCTTTGGTACTTATAATAAATACGTTGGTCTATTATATGGCATCCAAATGAACATGTTTGGTACAGGGTTAAGGCAATTAGGAGTCCAACTCTTTGGTATCTTGTTTGTTGTGGTTGTCAATGTTATAAGCACGAGTTTGATATGTCTCTTGGTTCAACTTTTCGTTCCATTAAGAATGTCTGAAGAGGATATGGAGATTGGTGATGAGGCTGCTCATGGGGAAGAAGCTTATGCAATCTGGGGTCAGGGTGATAAGCTTGAAAATTCAAGTTCAAAGTATGGAAGTTCATTGTATGAAGATCTTGAAGCTCCTGGGGCCACCAAGAACAAGCGTGGTGGTGGCCAGCTCGAGATGACCTCAAACTAA 1458 0.4547 MSTVVPLPSNLAFSDASPEWMNKADNAWQLTAATLVGLMSIPGLMIMYGGAVKKKWAVNSAFMALYAFACVIFCWVFWGYRMSFGDKLFPFLGKPAVALDEKYLFKPAFFGMFPNVTMVYFQGVFAAITEILLAGAVLGRMNFYAWMLFVPLWLTFSYTFVAFSIWCPAGFLSKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYTVSMDASLAVLNTHACTATSLLTWVILDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAALIMGVFSGSIPWFTMMVIHKRSKLLQKVDDTMAVLHTHAIAGSLGGILTGLFAEPRLNYLFFGTYNKYVGLLYGIQMNMFGTGLRQLGVQLFGILFVVVVNVISTSLICLLVQLFVPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLENSSSKYGSSLYEDLEAPGATKNKRGGGQLEMTSN* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3457 485 ProSitePatterns Ammonium transporters signature. 179 204 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lja2g3457 485 PANTHER AMMONIUM TRANSPORTER 2 483 - -
Lja2g3457 485 PANTHER AMMONIUM TRANSPORTER MEP2 2 483 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lja2g3457 485 SUPERFAMILY Ammonium transporter 20 423 - -
Lja2g3457 485 PRINTS Rhesus blood group protein signature 122 138 IPR002229 GO:0005887
Lja2g3457 485 PRINTS Rhesus blood group protein signature 218 236 IPR002229 GO:0005887
Lja2g3457 485 PRINTS Rhesus blood group protein signature 249 271 IPR002229 GO:0005887
Lja2g3457 485 TIGRFAM amt: ammonium transporter 25 441 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lja2g3457 485 Gene3D Ammonium transporter AmtB like domains 8 445 IPR029020 -
Lja2g3457 485 Pfam Ammonium Transporter Family 27 441 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3457 Lja-Chr2 80918466 80921196 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3457 117 476 Inorganic Solute Cotransporters AT2G38290 61.602 3.68e-144 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3457 K03320 - gmx:100787856 819.69