Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3454 ATGTCAGAGTCAAACGCAATTGCAAATGGTTTGGCTGGTGCAGGTGGTGGAATTATCGCTCAAATCATAACTTATCCTCTTCAAGCGGTAAACACGCGCCAGCAAACTGAGAGAACACTCAAGAGGAACAAGCAAAACTTAAACACAAGTGCCACTGCTCCTGCTTCTGCTCCAGGCACTCTTTTTCAGATATTTCAGGTCATTGGAAATGAGGGCTTGGGTGGACTCTACAGTGGCCTCAAGCCTTCTCTTCTTGGAACTGCTGCTTCTCAGGGCATTTACTACTACTTCTATCAAGTTTTCAAGAACAAAGCGGTGGCCATTGCTGCTGCTCGGAAAGTCAAAGGGCATGGAGATGGCACTGTTGGAATGTTTGGCTGGCTTGTTGTGGCTGCAATTGCTGGGTCCTTGAATGTATTGTGTACAAACCCAATATGGGTTCTAGTGACTCGTATGCAGACACACACTCAAGCAGAAAGAAAAATCATGGAGCAAAAGAAAGAAGCATTGAGGAGGGATGCTTCAGAAAGCAGTTTAGCAGGTTCAACATTAGAAGACCAATTGGCTGAACTCAATTCTATAAAACCCCGACCATATGGAACTATACATGCAGCTAATGAAGTATATAATGAAGCGGGTATTGTTGGATTTTGGAAGGGTGTCTTCCCTGCCCTTATTATGGTTTGCAATCCATCAATCCAGTTTATGATCTATGAGAGTTCATTAAAGCGTCTAAGAGAAAAACGTGCGGCTAAGAAGCAGGGGAGTAGTAGTGTAACCGCTTTGGAGGTCTTTTTGGTGGGAGCAATAGCAAAACTTGGAGCGACTGTCACAACATATCCCTTGCTAGTTGTCAAGTTTTTTCTTTCCATGCAGTCAAGGCTTCAAGCAAAACAGGAGATTGGTGGAAGTAACACATTAAGATACACAGGTACTTTTGATGCAATACTTAAAATCATCCGTTATGAAGGATTTCCTGGTTTTTACAAGGGGATGAGCACAAAGATAGTGCAGAGTGTTTTTGCAGCTTCTGTTTTATTCATGATTAAGGAGGAGCTTGTTAAGGCTTTTATGGTGCTAACTGATAAGAGCAAGAAAGTTGTATTAAATTTGGGTAGTTGA 1122 0.4242 MSESNAIANGLAGAGGGIIAQIITYPLQAVNTRQQTERTLKRNKQNLNTSATAPASAPGTLFQIFQVIGNEGLGGLYSGLKPSLLGTAASQGIYYYFYQVFKNKAVAIAAARKVKGHGDGTVGMFGWLVVAAIAGSLNVLCTNPIWVLVTRMQTHTQAERKIMEQKKEALRRDASESSLAGSTLEDQLAELNSIKPRPYGTIHAANEVYNEAGIVGFWKGVFPALIMVCNPSIQFMIYESSLKRLREKRAAKKQGSSSVTALEVFLVGAIAKLGATVTTYPLLVVKFFLSMQSRLQAKQEIGGSNTLRYTGTFDAILKIIRYEGFPGFYKGMSTKIVQSVFAASVLFMIKEELVKAFMVLTDKSKKVVLNLGS* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3454 373 ProSiteProfiles Solute carrier (Solcar) repeat profile. 259 356 IPR018108 -
Lja2g3454 373 Gene3D Mitochondrial carrier domain 11 367 IPR023395 -
Lja2g3454 373 SUPERFAMILY Mitochondrial carrier 5 352 IPR023395 -
Lja2g3454 373 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 244 IPR018108 -
Lja2g3454 373 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 4 365 IPR044712 GO:0006862|GO:0055085
Lja2g3454 373 ProSiteProfiles Solute carrier (Solcar) repeat profile. 4 104 IPR018108 -
Lja2g3454 373 PANTHER PEROXISOMAL NICOTINAMIDE ADENINE DINUCLEOTIDE CARRIER 4 365 - -
Lja2g3454 373 Pfam Mitochondrial carrier protein 4 103 IPR018108 -
Lja2g3454 373 Pfam Mitochondrial carrier protein 259 358 IPR018108 -
Lja2g3454 373 Pfam Mitochondrial carrier protein 122 246 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3454 Lja-Chr2 80626313 80632304 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3454 26 359 Chloroplast and Mitochondria Gene Families AT2G47490 28.994 2.59e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3454 K13354 - gmx:100777898 588.956