Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3444 ATGGTTCCTAGGAGTTTTGTGAAGAAATATGGGAAAGATTTAGCAAACCCAGTAATCCTTCAGGTCCCACATGGTCCAAAATGGAAAGTCTCATGGATTAAACGTGACAATGATATTTGGTTCAAGAGAGGTTGGGAAGGATTTGCACAACACTATTCACTGAGTCATGGACATTTCTTAGTTTTTAAATATGATAAAGGAGGATCTGATTTTTTTCAAGTCATAATATTTGATAAGAATGCTTCAGAAGTAGACTATTGGAGTAAGAGATGCAGTACCGATGATGGTGAAAAGAGCAGTGAACAATTTGAAGATGGTGAAAAGAGTAGTGATTTTGTTGAGCTTTTGGATGATGATGATGATGATTATGAGTTCAGTGAAGGGTCAAGATCTCCATTAGCTCGTAAAAAAAGAATGAAAACCAATGCAGATAGAGATGATGATGATGGTTTATTTCAAAGGAGAAAGCGAGAGAAGAGAAAAATCAGTCTGGGTTTGGAATCTACTCATCAAAAAGAAGCTGAAGCACTAGAAGTTGGTATAAGGAGAGCTTTAGAGAGAGCCAAAAAGTTTCCTCCCAAAAAACCCTTTTTCATTCGGCAATTGTTTCCTTCTTACCTCCAAAATATTTTGGTAATACCAACAAGTTTTTCCAAAAAATACATGCAGGAGTTGAGTGGGGTTGCAACCATTTGGGTGGATGAGGATGAGGACAGACCTTGGTCCGTGAATTTCAAGTTTAACAGCGGCAGTAACAGAAGTGTTATGACCACTGGTTGGACCGCACTTGTCCAGAAATATAATTTACAAGAGGGTGATGTTTGTGTTTTTGAGATGATCGATCACTCAAAATTCTACTTCAAAGTTACTGTTTACCGAGCCAGAGAACAATGTCAATCAACCTCTCATCACCATTTTCAAGATTCTGGAAATCCTAGTAAAGAAGGTTAA 951 0.3764 MVPRSFVKKYGKDLANPVILQVPHGPKWKVSWIKRDNDIWFKRGWEGFAQHYSLSHGHFLVFKYDKGGSDFFQVIIFDKNASEVDYWSKRCSTDDGEKSSEQFEDGEKSSDFVELLDDDDDDYEFSEGSRSPLARKKRMKTNADRDDDDGLFQRRKREKRKISLGLESTHQKEAEALEVGIRRALERAKKFPPKKPFFIRQLFPSYLQNILVIPTSFSKKYMQELSGVATIWVDEDEDRPWSVNFKFNSGSNRSVMTTGWTALVQKYNLQEGDVCVFEMIDHSKFYFKVTVYRAREQCQSTSHHHFQDSGNPSKEG* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3444 316 ProSiteProfiles B3 DNA-binding domain profile. 211 295 IPR003340 GO:0003677
Lja2g3444 316 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 294 - -
Lja2g3444 316 PANTHER B3 DOMAIN-CONTAINING 1 294 - -
Lja2g3444 316 SMART B3_2 1 80 IPR003340 GO:0003677
Lja2g3444 316 SMART B3_2 198 295 IPR003340 GO:0003677
Lja2g3444 316 CDD B3_DNA 1 78 IPR003340 GO:0003677
Lja2g3444 316 MobiDBLite consensus disorder prediction 119 152 - -
Lja2g3444 316 ProSiteProfiles B3 DNA-binding domain profile. 1 80 IPR003340 GO:0003677
Lja2g3444 316 SUPERFAMILY DNA-binding pseudobarrel domain 193 296 IPR015300 -
Lja2g3444 316 Pfam B3 DNA binding domain 2 79 IPR003340 GO:0003677
Lja2g3444 316 Pfam B3 DNA binding domain 202 294 IPR003340 GO:0003677
Lja2g3444 316 MobiDBLite consensus disorder prediction 126 152 - -
Lja2g3444 316 SUPERFAMILY DNA-binding pseudobarrel domain 1 80 IPR015300 -
Lja2g3444 316 Gene3D - 1 82 IPR015300 -
Lja2g3444 316 Gene3D - 180 297 IPR015300 -
Lja2g3444 316 CDD B3_DNA 211 293 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3444 Lja-Chr2 80138803 80144508 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3444 2 304 B3 DNA Binding Superfamily AT3G18990 30.904 5.52e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja2g3444 B3 3.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3444 - - mtr:MTR_5g044670 254.218