Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3439 ATGCTGGTTTGTTCTTTGGTTAACAAAATCAGACACTTTTTGCAAGAGTGTGTATCAGAGTTCATCAGCTTCATCACAGCAGAGGCCTCTGATAAGTGCCAGAACGAGAAGAGGAAGACCATCAACAGCGATGATCTTGTGTGGGCCATGACCACGCTCGGCTTTGAAGAGTATGTGCAGCCCCTGAAGGGTTACCTCCATAAGTACAGGGACATGGAGGGGGAGAAGACTAATTCTAATTTCATTGGGAGGCAGCAACAGCAACAGCAGCAGCAGGTTGATCATGATGATCTTGGTGGTGCGCCAATGCCATCATCATCCACTATGATGATGATGTCCTCAGCGCATCACCATCAAGGGTTTATGTCTGCATCTGAAAATGTTTGGAAGAACTAG 396 0.4672 MLVCSLVNKIRHFLQECVSEFISFITAEASDKCQNEKRKTINSDDLVWAMTTLGFEEYVQPLKGYLHKYRDMEGEKTNSNFIGRQQQQQQQQVDHDDLGGAPMPSSSTMMMMSSAHHHQGFMSASENVWKN* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3439 131 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 120 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lja2g3439 131 MobiDBLite consensus disorder prediction 76 109 - -
Lja2g3439 131 MobiDBLite consensus disorder prediction 78 95 - -
Lja2g3439 131 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 10 50 IPR003958 -
Lja2g3439 131 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 12 120 - -
Lja2g3439 131 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Lja2g3439 131 PRINTS CCAAT-binding transcription factor subunit A signature 33 51 - -
Lja2g3439 131 PRINTS CCAAT-binding transcription factor subunit A signature 14 32 - -
Lja2g3439 131 SUPERFAMILY Histone-fold 10 88 IPR009072 GO:0046982
Lja2g3439 131 Gene3D Histone, subunit A 5 98 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3439 Lja-Chr2 80036430 80036825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3439 14 89 CCAAT-HAP3 Transcription Factor Family AT4G14540 73.684 9.57e-37 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lja2g3439 CBFD_NFYB_HMF 4.7e-13 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3439 K08065 - rcu:8260269 126.331