Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3437 ATGAGTCATTCTCAAAATAACATTCACTTTTTCAAGGTTATTCTTGAAAGAAGCCTTAGAGATGGAGAACTGCAAGTGCCAAGAAGTTTTGTGAAGAGGCACTGGCAAGAAATATCACCTGCTGTTTCTCTGAGGCTTCCAAACGGGACTGAATGGAAAGTCTATTGGCTGAAACGCGACGGCGATGTTTATTTTCGCAACGGTTGGAAAGAATTTGCAGAACACTTGTCTTTGGAAGTGTCACAGATTGTGTTGTTTGGGTACGAAGGAAATTCGTGCTTCAATGTGATTGTGTTGGGTAAAAGCGCGTTAGAAATAGATTACCCTAATTCCAAAGATAATAATAATACTCCTCTTGATCAAGAAGAAGAATGTGAAGAGGTTCATGAAAGTGATTATGGTGAGAAGGGTAAAAGTGGACATCCTGCATTACCAGCACCTTCTAAGAAGATGAAAACATGTCCAAATGAAGAACATGCAAGTTTTTCCAATGCTGAGAATGGGAATAGTGGAAGTGCTGACAAAGAGCTTAGTAACAGAATCCATGCTCTTTTTGAGAGAGTGGAGAATTTTCATCGTGATAGTCACACTTTCATATGTGCAATCCGAAAATCATACATTGAGAGAGATCTCCTGATCATACCAAACGACTTTGCTAGACTGCACCTGCACAAGATGGAAGGTGAAATGGTTACCCTTTATGTCGACAACAAGGAAAGAACTTGGGATGTTGAGTTAAAGCTCAACTCCTCTGCTCAATTCACATTTGCAATTGGTTGGAGAAAATTTTTGAGGGCCAATAATTTGAAATTGGGTGATGTTTGTGCTTTTGTTCTAGACAACAAATCCAATAAGAGAGTTTCACTCAAAGTTGTTATTTATGCTCTTGAGAAGTACACAAGCACTCTCCTCTTTCATGGGCTTCCTCAAAGGCATTCTCCATCCCTCAAATCCCCTAAAACTAGTAAAGTTGAAAGCAAATATATGTCAAAGGATGGTGGATTCAACATCAACATAAAGCTTCCAATATTGTCTTCGGTGGCAATACCAATTAAGTACATGAAGAATTTTATTTCAAAAAGCGACCATGGAAAAAGTGTGACCTTGCGAGTTGGGAATAAGAAATGGACTGTGAAACTTCTTTACTATGAACATTTCTCCTCTGCAAGATTTTCTCTAGGCTGGCCCGAATTTGTGAAGGAGTGTGACTTGAAAACTGGTGATGTTTGTCACTTTAAGATGATAGATGAGAAAAACCTTGAGCTTCAAGTTACTATAAATTAG 1284 0.3863 MSHSQNNIHFFKVILERSLRDGELQVPRSFVKRHWQEISPAVSLRLPNGTEWKVYWLKRDGDVYFRNGWKEFAEHLSLEVSQIVLFGYEGNSCFNVIVLGKSALEIDYPNSKDNNNTPLDQEEECEEVHESDYGEKGKSGHPALPAPSKKMKTCPNEEHASFSNAENGNSGSADKELSNRIHALFERVENFHRDSHTFICAIRKSYIERDLLIIPNDFARLHLHKMEGEMVTLYVDNKERTWDVELKLNSSAQFTFAIGWRKFLRANNLKLGDVCAFVLDNKSNKRVSLKVVIYALEKYTSTLLFHGLPQRHSPSLKSPKTSKVESKYMSKDGGFNINIKLPILSSVAIPIKYMKNFISKSDHGKSVTLRVGNKKWTVKLLYYEHFSSARFSLGWPEFVKECDLKTGDVCHFKMIDEKNLELQVTIN* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3437 427 ProSiteProfiles B3 DNA-binding domain profile. 347 427 IPR003340 GO:0003677
Lja2g3437 427 Gene3D - 2 103 IPR015300 -
Lja2g3437 427 Pfam B3 DNA binding domain 347 426 IPR003340 GO:0003677
Lja2g3437 427 Pfam B3 DNA binding domain 202 287 IPR003340 GO:0003677
Lja2g3437 427 Pfam B3 DNA binding domain 11 98 IPR003340 GO:0003677
Lja2g3437 427 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 3 294 - -
Lja2g3437 427 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 346 426 - -
Lja2g3437 427 MobiDBLite consensus disorder prediction 157 174 - -
Lja2g3437 427 SUPERFAMILY DNA-binding pseudobarrel domain 347 424 IPR015300 -
Lja2g3437 427 PANTHER B3 DOMAIN-CONTAINING 346 426 - -
Lja2g3437 427 Gene3D - 317 427 IPR015300 -
Lja2g3437 427 Gene3D - 179 299 IPR015300 -
Lja2g3437 427 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Lja2g3437 427 CDD B3_DNA 343 426 IPR003340 GO:0003677
Lja2g3437 427 CDD B3_DNA 212 294 IPR003340 GO:0003677
Lja2g3437 427 SUPERFAMILY DNA-binding pseudobarrel domain 4 102 IPR015300 -
Lja2g3437 427 MobiDBLite consensus disorder prediction 109 174 - -
Lja2g3437 427 SMART B3_2 10 102 IPR003340 GO:0003677
Lja2g3437 427 SMART B3_2 199 293 IPR003340 GO:0003677
Lja2g3437 427 SMART B3_2 339 423 IPR003340 GO:0003677
Lja2g3437 427 SUPERFAMILY DNA-binding pseudobarrel domain 192 287 IPR015300 -
Lja2g3437 427 CDD B3_DNA 9 99 IPR003340 GO:0003677
Lja2g3437 427 ProSiteProfiles B3 DNA-binding domain profile. 197 297 IPR003340 GO:0003677
Lja2g3437 427 PANTHER B3 DOMAIN-CONTAINING 3 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3437 Lja-Chr2 79999640 80002451 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3437 367 425 B3 DNA Binding Superfamily AT3G18990 37.288 2.33e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja2g3437 B3 1.4e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3437 - - lang:109332968 353.214