Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3436 ATGACGACTCGCAACATGCCAAATAATCACTCTCCAATCCTTTTCTTTAAGATCATCACAACGACAAGTATTGAAGCTGGAGAGCTTAGGATTCCAAACAATTTCACTAAGAGATATGGTGGTGATATGTCAAACCCAATGTTTCTCAAGCCTCCAGATGGAACTGAATGGCAAATATGTCATAGTAAAACTGATGGGGATGTTTGGTTTCAAAATGGTTGGAAAGATTTTGCGAAATATTACTCCCTCGATCACGGACACATGGTGTTGTTTGAATACAAGGATTCTTCTCATTTTGGGGTACATATATTTGATAAGAGCACCCTTGAAATAAGATATCCTTCACATGAGAATCAAGATGAAGAGCACAACCCTGATCAGATTGATGATGACTCTGTTGAGATATTGGATAAGATACCTCCTTGCAAGAAGACTAAACTGAAATCACCAATGTCGTGTCCTAAACCACGCAAGAAATTGAGAACCAGTACAAGTGAAGATGTTGGAGAAAGGCCTGAATTGCACAACTTGCCTAAACAAGTCAAAATTGAAGATGATGTCAGTGGAAATACTGAATGCCTTGAAAGGGAGGACTTAACTTCCAAAATCACTGAAGCTTTGAACAGAGCCAGAACTTTCCAATCTAAAATTCCCTCCTTCATGACTGTCATGAAACCTGCCTATGTTGATGGATATTCCTTGCATATCTCATCATTATTTGCAAAAAAATATTTGAAGAATGCAACGGATGTCCTCCTGCAAGTCTTGGATGGGAGAACTTGGTCTGTTAGTTTTAACCTCGGTAAATTCAATGCTGGGTGGAAGAAATTCGCATCAGTTAATAATTTGAAGGTGGGAGATGTATGTCTTTTTGAGCTAAACAAGAGTGTACCCCATTCATTGAAAGTATTGATCTTTCCACTTGCGGAAAAACTGCATTCGCCGTCTCAATCACCAGTTCAAGGAGATAGAGTCAATCGTATCAACTATGGGAGATTCCGGTATACTGAAATTCAAAATGTTCTTACCACCAAATGTGGGGAGACAACTAAAAGAGCTTCAAAGCTAATTAGCCCCCGCCTCCGCCCCTTGACAAATGCTGCTCTGGAAGAAGCTAACAAATTCAACTCAAACAACCCTTTTTTCATAGTCAATTTAGCGCCAGATATGGAGTGGGATTACAGACCGACCGCGTGTACCAAATCCCTTCATCAGAGAGTACTTCAATGA 1230 0.3992 MTTRNMPNNHSPILFFKIITTTSIEAGELRIPNNFTKRYGGDMSNPMFLKPPDGTEWQICHSKTDGDVWFQNGWKDFAKYYSLDHGHMVLFEYKDSSHFGVHIFDKSTLEIRYPSHENQDEEHNPDQIDDDSVEILDKIPPCKKTKLKSPMSCPKPRKKLRTSTSEDVGERPELHNLPKQVKIEDDVSGNTECLEREDLTSKITEALNRARTFQSKIPSFMTVMKPAYVDGYSLHISSLFAKKYLKNATDVLLQVLDGRTWSVSFNLGKFNAGWKKFASVNNLKVGDVCLFELNKSVPHSLKVLIFPLAEKLHSPSQSPVQGDRVNRINYGRFRYTEIQNVLTTKCGETTKRASKLISPRLRPLTNAALEEANKFNSNNPFFIVNLAPDMEWDYRPTACTKSLHQRVLQ* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3436 409 CDD B3_DNA 218 307 IPR003340 GO:0003677
Lja2g3436 409 SUPERFAMILY DNA-binding pseudobarrel domain 213 306 IPR015300 -
Lja2g3436 409 Pfam B3 DNA binding domain 220 306 IPR003340 GO:0003677
Lja2g3436 409 Pfam B3 DNA binding domain 15 106 IPR003340 GO:0003677
Lja2g3436 409 Gene3D - 8 108 IPR015300 -
Lja2g3436 409 Gene3D - 200 310 IPR015300 -
Lja2g3436 409 ProSiteProfiles B3 DNA-binding domain profile. 219 309 IPR003340 GO:0003677
Lja2g3436 409 PANTHER B3 DOMAIN-CONTAINING 10 306 - -
Lja2g3436 409 SMART B3_2 15 107 IPR003340 GO:0003677
Lja2g3436 409 SMART B3_2 220 309 IPR003340 GO:0003677
Lja2g3436 409 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Lja2g3436 409 CDD B3_DNA 14 105 IPR003340 GO:0003677
Lja2g3436 409 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 10 306 - -
Lja2g3436 409 SUPERFAMILY DNA-binding pseudobarrel domain 10 107 IPR015300 -
Lja2g3436 409 MobiDBLite consensus disorder prediction 145 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3436 Lja-Chr2 79988685 79994692 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3436 14 340 B3 DNA Binding Superfamily AT3G18990 27.957 9.11e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja2g3436 B3 1.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3436 - - lja:Lj5g3v0508090.1 724.161