Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3434 ATGGCATCCAACAAGCAAGATAAGAACTCTCCAATCCGATTCTTTAAGATCATCACCACAACAAGTATTGAAGGTGGAAATCTTAAACTTCCAAATGCTTTCACTAGGAAATACAATGGTGAAATGTCAAATCCAGTATTTCTCAAGCCTCTTGATAATATTAGCTGGAAGATAAACTGGAGTAAACAAGATTCAGATATTTGGTTACAAAATGTTTGGGAGGAATTTGTGAAACTTTACTCCCTTGATCAAGGGCACATGGTTTGGCACTTGGTTTTATTTGAATTCAAGGGTCCTTCTAAGTTTGAGGTGCGTATATTTGACAAGAACACCCTTGAAATAAAATACCATCCACTCAGTAACAAGCAAATTCCGAACTCAGCAACCCATTTCTTTAGGATCATCACACCACCATGTCTTGAAGCTGGAGAGCTTATTCTTCCAAATGGTTTCATGAAGAAATACAGTGGTGGCATGTCAAACCCAGTATTTCTCAAGGCCCCTGATAACATTAGTTGGGAGGTACACTGGAGCAAACATGATTCATATTTTTGGTTCCAAAAGGGTTGGAAAGAGTTTGTGAAATATTACTCCCTTGATCATGGGCATTTGGTATTGTTTGAATTCAAGGATGCTTCTGATTTTGGGGTACACATATTTGATAAGAGCACCCTTGAAATAGAATATCCTTCAAATGAGAATCAAGGTGAAGAGCACAACCCTGATCAGATTGGTGATGAGATACTGCCGCCCAAGAAGACTAAACCAAAACCACCAATGTCACTTTCTCAACCACGCCAGAAATTGAGAACCGGTAAAAGCAAAGGTGTTGGAAAAAGCCCTGAATTGAGAAAGTGTAAAAAAGTCCAAGTTGAAGGAAGAAGCACTGAATGCCTTGAAGGAGAGCAGTTAACTTCTACAATCAATGATGCTTTGAATAAATCTAAAGGTGCCACCTTCATGGTTAAGCTGCAACGTTACAGTATTGAAAGACATTCCTTGAGTATCCCATCACAATTTGCTAGACAATATTTAAAGAAGAAAAGGGATATCCGCCTTGAGAGGTTGGATGGGAGAACTTGGAAGGTTCATTATAATCTCTTCAAATTTAGTAGTGGGTGGAAGAAATTTGCAAGAGATAACAATTTGAAAGTGGGGAATATTTGTGTTTTTGAGCTGACCAAAAGGGAACCCCTTTCATTGAAAGTATTGATCTTCCCAGTTGCACAAGGTGGGGAGCCAAGTACTGCACAGAGGGAAGCTTGGAAATACACCCCAAAGAATCCCTCTTTCACTGTCAGTTTAAAGCCGGTCATTAAACTTGGCTACAGACCGCCTGTACCCGTTTCCTTCATCAGAGAGTACTTGAATGAGAAGAAACAAACCATAAATTTAAGGATTGAAGAAAATTTGTGGCCTGTGGAGTTTATATATTATCCAGAATATGGTTCAGGCAAGTTGTCTAAAGGTTGGATACAATTTGCAAGAGAAAGTAAACTTGTAGGTGGAGATGTTTGTGTGTTTGAACTCATCAACAAGGAGGAGGAAAATCCAGAGCTTGAAGTTCATATCTTGAAACGTCACTGA 1587 0.3907 MASNKQDKNSPIRFFKIITTTSIEGGNLKLPNAFTRKYNGEMSNPVFLKPLDNISWKINWSKQDSDIWLQNVWEEFVKLYSLDQGHMVWHLVLFEFKGPSKFEVRIFDKNTLEIKYHPLSNKQIPNSATHFFRIITPPCLEAGELILPNGFMKKYSGGMSNPVFLKAPDNISWEVHWSKHDSYFWFQKGWKEFVKYYSLDHGHLVLFEFKDASDFGVHIFDKSTLEIEYPSNENQGEEHNPDQIGDEILPPKKTKPKPPMSLSQPRQKLRTGKSKGVGKSPELRKCKKVQVEGRSTECLEGEQLTSTINDALNKSKGATFMVKLQRYSIERHSLSIPSQFARQYLKKKRDIRLERLDGRTWKVHYNLFKFSSGWKKFARDNNLKVGNICVFELTKREPLSLKVLIFPVAQGGEPSTAQREAWKYTPKNPSFTVSLKPVIKLGYRPPVPVSFIREYLNEKKQTINLRIEENLWPVEFIYYPEYGSGKLSKGWIQFARESKLVGGDVCVFELINKEEENPELEVHILKRH* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3434 528 MobiDBLite consensus disorder prediction 232 282 - -
Lja2g3434 528 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 124 406 - -
Lja2g3434 528 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 415 525 - -
Lja2g3434 528 Pfam B3 DNA binding domain 14 109 IPR003340 GO:0003677
Lja2g3434 528 Pfam B3 DNA binding domain 135 222 IPR003340 GO:0003677
Lja2g3434 528 Pfam B3 DNA binding domain 322 407 IPR003340 GO:0003677
Lja2g3434 528 Pfam B3 DNA binding domain 447 525 IPR003340 GO:0003677
Lja2g3434 528 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 117 - -
Lja2g3434 528 SUPERFAMILY DNA-binding pseudobarrel domain 126 223 IPR015300 -
Lja2g3434 528 CDD B3_DNA 429 526 IPR003340 GO:0003677
Lja2g3434 528 SUPERFAMILY DNA-binding pseudobarrel domain 316 406 IPR015300 -
Lja2g3434 528 CDD B3_DNA 320 407 IPR003340 GO:0003677
Lja2g3434 528 ProSiteProfiles B3 DNA-binding domain profile. 319 409 IPR003340 GO:0003677
Lja2g3434 528 SMART B3_2 320 409 IPR003340 GO:0003677
Lja2g3434 528 SMART B3_2 14 110 IPR003340 GO:0003677
Lja2g3434 528 SMART B3_2 431 528 IPR003340 GO:0003677
Lja2g3434 528 SMART B3_2 131 223 IPR003340 GO:0003677
Lja2g3434 528 Gene3D - 303 410 IPR015300 -
Lja2g3434 528 Gene3D - 412 528 IPR015300 -
Lja2g3434 528 SUPERFAMILY DNA-binding pseudobarrel domain 424 526 IPR015300 -
Lja2g3434 528 SUPERFAMILY DNA-binding pseudobarrel domain 10 110 IPR015300 -
Lja2g3434 528 MobiDBLite consensus disorder prediction 232 253 - -
Lja2g3434 528 ProSiteProfiles B3 DNA-binding domain profile. 13 110 IPR003340 GO:0003677
Lja2g3434 528 Gene3D - 5 111 IPR015300 -
Lja2g3434 528 Gene3D - 123 224 IPR015300 -
Lja2g3434 528 ProSiteProfiles B3 DNA-binding domain profile. 130 223 IPR003340 GO:0003677
Lja2g3434 528 CDD B3_DNA 13 108 IPR003340 GO:0003677
Lja2g3434 528 ProSiteProfiles B3 DNA-binding domain profile. 430 528 IPR003340 GO:0003677
Lja2g3434 528 CDD B3_DNA 130 221 IPR003340 GO:0003677
Lja2g3434 528 PANTHER B3 DOMAIN-CONTAINING 124 406 - -
Lja2g3434 528 PANTHER B3 DOMAIN-CONTAINING 415 525 - -
Lja2g3434 528 PANTHER B3 DOMAIN-CONTAINING 5 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3434 Lja-Chr2 79956722 79959964 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3434 413 515 B3 DNA Binding Superfamily AT3G18990 35.577 1.01e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja2g3434 B3 1.9e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3434 - - lja:Lj0g3v0340729.1 1090.49