Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3432 ATGGTTTTTGAATACAAGGATACTTCTCACTTTGGGGTACACATATTTGATAAGAGTAGCCTTGAGATAGAATATCCTTCTCATGGGAGTCAAGATGAACAGCACAATCCTGATCAGATTCATGATGATTTAGTTGAGACATTAGATGGGATCACCCCTTGCAAGAAGACCAAACTGAAATCCCCAATTTCATGTCCTCAACCACGTAAGAAATTGATAAGCAAGAATGCTGAAGGTAAAACTGCTGTTACCAATCCAAGCAAAGGTGGGGAGACAAGTACAGCTACAAGAACTTCAAAGCTCAGAAATGCTGCTGCTCAGATGGAAGCTCAGAAATTCACCCCAAAGAATCCCTCTTTCATAATCAATTTAAATCCAAATATGAGCAGAAGTTATAGACCGAATATACCAATGTCCTTTATCAGAGAGCACTTGAAGGAGAAGACACAGACCATAAAGTTGAAGTTTGAAAAGAAATGGTGGCCTGTGGAGTTGACATTTTATCCAGACCATGGTTCAGGGAAGTTATCTACAGGTTGGACTCTATTTGCACGAGAATGTAAACTAGTAGGAGGAGATGTTGCTGTCCTTGAGCTCATCAACAAAGAAGATCCAGAGCTTGAAGTTCATATTTTCAAAGGTTACTGA 648 0.3966 MVFEYKDTSHFGVHIFDKSSLEIEYPSHGSQDEQHNPDQIHDDLVETLDGITPCKKTKLKSPISCPQPRKKLISKNAEGKTAVTNPSKGGETSTATRTSKLRNAAAQMEAQKFTPKNPSFIINLNPNMSRSYRPNIPMSFIREHLKEKTQTIKLKFEKKWWPVELTFYPDHGSGKLSTGWTLFARECKLVGGDVAVLELINKEDPELEVHIFKGY* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3432 215 MobiDBLite consensus disorder prediction 57 97 - -
Lja2g3432 215 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 213 - -
Lja2g3432 215 Pfam B3 DNA binding domain 123 213 IPR003340 GO:0003677
Lja2g3432 215 SUPERFAMILY DNA-binding pseudobarrel domain 113 213 IPR015300 -
Lja2g3432 215 CDD B3_DNA 118 213 IPR003340 GO:0003677
Lja2g3432 215 ProSiteProfiles B3 DNA-binding domain profile. 119 215 IPR003340 GO:0003677
Lja2g3432 215 PANTHER B3 DOMAIN-CONTAINING 1 213 - -
Lja2g3432 215 Gene3D - 98 214 IPR015300 -
Lja2g3432 215 MobiDBLite consensus disorder prediction 78 97 - -
Lja2g3432 215 SMART B3_2 120 215 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3432 Lja-Chr2 79897071 79897946 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3432 1 213 B3 DNA Binding Superfamily AT3G18990 27.692 5.14e-16 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja2g3432 B3 2.9e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3432 - - lja:Lj5g3v0508090.1 164.081