Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3431 ATGACTTGCAACAAGCATAATAAGCATTCTGGAGTCCCTTTCTTCAAGATCATTACAACAACATGTCTTGAAACTGAAAAGCTTATTCCAAACGGTTTCACTAGGAAATTCAATGGTGATATGTCAAACCCGGTAATTCTCAAGCCTCCAGATGACACTAAATGGGAGATACATTGGAGCAAACATGATTCTGAGATTTGGTTTCAAAAGGGTTTGAAAGAATTCGCGAAATATTACTCCCTGGATCATGGGCACTTGGTGTTGTTTGAATTCAAGGATGCCTCTAATTTTGAGGTGCGTATATTTGGCAAGGGCACCCTTGAAATAGAATATCCTATGATCCATGGCAATCAAGATGAACAGAACAACAACCTTGATCAGATGAGTGACAACTCAGTTGAAATTTTGGATGAGCTACCTCCATGCAAGAAGACTAGGCTAAAATCACCAATATCAAAAACTCAACCACATAGGAAATTGAGAGCTGGAATTACTGGAGATGTTGGAAGTAGCTCCAGATTGAAGAATTATTCAAAACAAGTCAAAGTTGAAGGTAATCAGTCCCAAGATGCAAACTTTGAGAAGTCAACATTTGAACCTGACCAGAACAAATTGGAGGAGAATATGGATGGTACCTCTGGATTTGAGCATTTAACTCCTAAAATAACTGAAGGTTTAAAAAGAGGCACAACCTTGAGATCTATAAACCCCTCTTTCAAGATTGTCATGAAATCTTCATATATTGGTGGATATTCCTTGCACATCCCATCAAAATTTGCAGAAACATATTTGAAGAAGAAAGATGGTGATATCTTCCTTGAGGTCTTGGATGGGAGAAGTTGGCATGGTACATATGATCTCTACAAAATTAAAAATGGATGGAGGCAGTTTGTATTGGATAATAATTTGAAAGCAGGGGATGTTTGTCTTTTTGAGTTGACTAAGAAACAACCCCTTTCTTTTAAAGTATTGATCTTTCCACTTGAGGAAGAGCCATATCCCCATTCACCACAAGAATCAGCTCAAGGAGATGCAGTTAATAGCTTAGACCCTGCAACTGCAAGAAAGAACCCCAGATGTTAA 1083 0.3813 MTCNKHNKHSGVPFFKIITTTCLETEKLIPNGFTRKFNGDMSNPVILKPPDDTKWEIHWSKHDSEIWFQKGLKEFAKYYSLDHGHLVLFEFKDASNFEVRIFGKGTLEIEYPMIHGNQDEQNNNLDQMSDNSVEILDELPPCKKTRLKSPISKTQPHRKLRAGITGDVGSSSRLKNYSKQVKVEGNQSQDANFEKSTFEPDQNKLEENMDGTSGFEHLTPKITEGLKRGTTLRSINPSFKIVMKSSYIGGYSLHIPSKFAETYLKKKDGDIFLEVLDGRSWHGTYDLYKIKNGWRQFVLDNNLKAGDVCLFELTKKQPLSFKVLIFPLEEEPYPHSPQESAQGDAVNSLDPATARKNPRC* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3431 360 Gene3D - 222 330 IPR015300 -
Lja2g3431 360 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Lja2g3431 360 SUPERFAMILY DNA-binding pseudobarrel domain 12 104 IPR015300 -
Lja2g3431 360 SMART B3_2 239 329 IPR003340 GO:0003677
Lja2g3431 360 SMART B3_2 14 105 IPR003340 GO:0003677
Lja2g3431 360 PANTHER B3 DOMAIN-CONTAINING 7 326 - -
Lja2g3431 360 CDD B3_DNA 239 327 IPR003340 GO:0003677
Lja2g3431 360 ProSiteProfiles B3 DNA-binding domain profile. 238 329 IPR003340 GO:0003677
Lja2g3431 360 MobiDBLite consensus disorder prediction 145 165 - -
Lja2g3431 360 MobiDBLite consensus disorder prediction 333 360 - -
Lja2g3431 360 Pfam B3 DNA binding domain 239 326 IPR003340 GO:0003677
Lja2g3431 360 Pfam B3 DNA binding domain 14 103 IPR003340 GO:0003677
Lja2g3431 360 Gene3D - 5 106 IPR015300 -
Lja2g3431 360 CDD B3_DNA 14 102 IPR003340 GO:0003677
Lja2g3431 360 SUPERFAMILY DNA-binding pseudobarrel domain 235 327 IPR015300 -
Lja2g3431 360 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3431 Lja-Chr2 79889835 79893073 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3431 13 326 B3 DNA Binding Superfamily AT3G18990 28.571 2.06e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja2g3431 B3 6.6e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3431 - - lja:Lj2g3v0092560.1 619.772