Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3429 ATGACTTGCAACAAGCGAGACAAGCATTCTGCAATTCGTTTCTTTAAGATTATCACAACAAGAAGTCTTGAAGCTGGAAAACTTATGCTTCCAAATGGTTTCACTAGGGAACATGGTGGTGATGTGTCAAACCCAGTGTTTCTCAAGCCTCCAGATGACAAAGACTGGAAGATACATTGGACTAAACATGAAGATGGCTATATTTGGTTTGAAAAGGGTTGGAAAGAATTTGCTTCATACTACTCCCTTGATCATGGGTACTTGCTGTTGTTTGAATACAACAAACATTCTGATTTTGGGGTACACATATTTGACAAGAGTACCCTTGAAATAGAATACCCTTTCCAAGGCTATAAGGATGAACCCGACAATCTTGGTCAAATTAATGCTGATTTAGTTCAGAGTTTGGATGAGAGAACTTCATGCAAGAAGAGAAAACTGAAATCTCCAATGTCAAGTTCTCAACCAAGTAAGAAATTGAGACCTAGCACAAGTGGAGATGTTGGAAGAAGATCCAAATCGCCAAAGTTGCCTCAGCATGTTAAAGGTCATCATCAGTCTCAAGGGACCGAATTTGAGGAATTGGATGAGAATGTGAGTGGTGACTCCCTTGAATGCCTAAAATGGAAGGAGTTAACTTCTAAAATTACTAAGGCTTCAAACAGAGCCAGAACCATCACATCTAAAAACCCCTCTTTCAAAGTTGTCATCAAACCTGCCTATGCCAATAAATACATACGAGTTACATCAGAATTTGCAGAAAAGCATTTGAAGAACAAGCGAGGTGAGATCATCCTTCATGTCAAGGATGGGAGAACATGGCCTGTTAAATATGTTCTTGAAAAAGGGACAATCAGTGCTGGATGGAAGAAATTTGTATCAGACAATAACTTGAAAGTTGGGGATGTTTGTGTTTTTGAATTGACCAAGAGTCAACCTCTTTCTTTGAAGGTATCAATCTTTCCACCTGGGGGAGAATCAGATCAACCTCATTCCCCTCCATCACTAGGTAGGAAGGCAACTCAGAAAAGAGCTGATGCATTCACCCCAAAAAACCCCTATTTCACAGCCAATATAAAGCCAAACAAGTGGGGGGATTACAGACAGGATGTACCAAAGGCCTTTGTCAGGAAGCACTTAAAAAACAAGAAGCACTTGCGGTTGCGATTTGAAAATAAATTCTGGCCTGTAGGGTTGTACCATCTTCCAAAACGAGGTGTGGGCAAGTTGTCAAAAGGTTGGGCCCGATTTGCAAGAGAAAGTAAATTGCTGGTTGGAGATGTTTGTGTCTTTGAACTCATCAACAAGGAAGAAGATGCTCCTGTGTTTCATGTTCATATTTTCAAAGCCTAA 1353 0.4028 MTCNKRDKHSAIRFFKIITTRSLEAGKLMLPNGFTREHGGDVSNPVFLKPPDDKDWKIHWTKHEDGYIWFEKGWKEFASYYSLDHGYLLLFEYNKHSDFGVHIFDKSTLEIEYPFQGYKDEPDNLGQINADLVQSLDERTSCKKRKLKSPMSSSQPSKKLRPSTSGDVGRRSKSPKLPQHVKGHHQSQGTEFEELDENVSGDSLECLKWKELTSKITKASNRARTITSKNPSFKVVIKPAYANKYIRVTSEFAEKHLKNKRGEIILHVKDGRTWPVKYVLEKGTISAGWKKFVSDNNLKVGDVCVFELTKSQPLSLKVSIFPPGGESDQPHSPPSLGRKATQKRADAFTPKNPYFTANIKPNKWGDYRQDVPKAFVRKHLKNKKHLRLRFENKFWPVGLYHLPKRGVGKLSKGWARFARESKLLVGDVCVFELINKEEDAPVFHVHIFKA* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3429 450 Pfam B3 DNA binding domain 240 321 IPR003340 GO:0003677
Lja2g3429 450 Pfam B3 DNA binding domain 14 106 IPR003340 GO:0003677
Lja2g3429 450 Pfam B3 DNA binding domain 369 445 IPR003340 GO:0003677
Lja2g3429 450 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 321 - -
Lja2g3429 450 CDD B3_DNA 13 105 IPR003340 GO:0003677
Lja2g3429 450 MobiDBLite consensus disorder prediction 147 170 - -
Lja2g3429 450 SUPERFAMILY DNA-binding pseudobarrel domain 226 323 IPR015300 -
Lja2g3429 450 SMART B3_2 354 449 IPR003340 GO:0003677
Lja2g3429 450 SMART B3_2 14 107 IPR003340 GO:0003677
Lja2g3429 450 SMART B3_2 233 324 IPR003340 GO:0003677
Lja2g3429 450 SUPERFAMILY DNA-binding pseudobarrel domain 11 107 IPR015300 -
Lja2g3429 450 Gene3D - 213 323 IPR015300 -
Lja2g3429 450 Gene3D - 337 450 IPR015300 -
Lja2g3429 450 ProSiteProfiles B3 DNA-binding domain profile. 354 450 IPR003340 GO:0003677
Lja2g3429 450 SUPERFAMILY DNA-binding pseudobarrel domain 348 449 IPR015300 -
Lja2g3429 450 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 336 449 - -
Lja2g3429 450 PANTHER B3 DOMAIN-CONTAINING 6 321 - -
Lja2g3429 450 PANTHER B3 DOMAIN-CONTAINING 336 449 - -
Lja2g3429 450 CDD B3_DNA 231 322 IPR003340 GO:0003677
Lja2g3429 450 ProSiteProfiles B3 DNA-binding domain profile. 231 324 IPR003340 GO:0003677
Lja2g3429 450 ProSiteProfiles B3 DNA-binding domain profile. 13 107 IPR003340 GO:0003677
Lja2g3429 450 MobiDBLite consensus disorder prediction 319 342 - -
Lja2g3429 450 MobiDBLite consensus disorder prediction 140 195 - -
Lja2g3429 450 CDD B3_DNA 353 449 IPR003340 GO:0003677
Lja2g3429 450 Gene3D - 6 108 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3429 Lja-Chr2 79870937 79873630 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3429 338 434 B3 DNA Binding Superfamily AT3G18990 35.644 2.42e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja2g3429 B3 1.1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3429 - - lja:Lj0g3v0253159.1 922.154