Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3428 ATGGCATGCAACAAGCGAAATCAGCATTCTGCAATCAGTTTCTTCAAGATCATTACAACAACAAGTCTTGAAGCTGGAAAGCTTAAAATCCCAAATGGCTTCGCTAGGAAATATGGAGGTGATATGTCAAACCCAATGTCTATTAAGCCTCCAGATGGCACTGAATGGAAATTATATTGGAATGAACATGGTTCTGATATTTGGTTTCAAAAAGGTTGGAAAGAATTTTCGAAATATTACTCCCTGGATCATGGGCACTTGGTGTTGTTTGAATACAAGGATGCTTCTCATTTTGGGGTACATATATTTGATAAGAGTACTCTTGAGATAGAATATCCTTCACATGAGAATCAAGATGAAGAGCACAACCCTGATCAAATTGATGATGACTCAGTTGAGATATTGGATAAGATACCTCCTTGCAAGAAGACTAAACGGAAATCACCAATTTCATGTCCTCAACCACGTAAGAAATTGAGAACCAGCACTAGTGAAGATGTTGGAAGAAGACCCAAATTGCAAAAGTTTCCTAAGCAACACCTAGTTGGAGGTAATCAGTCTCAAGGTACAAACTTTGAGGAGTCAACATTGGAAATGGAACCTGTCCATAATGAGTTGGAGGATGATGCAGGTGGAACCACTGAATGCCTTAAAGGGGAACACTTAACTTCTAAAACCACTAAACCTTTGAAAAGAGCCGGAGCCCTCAGATTTGGAAATTCCTTCTTCACCATTACGATGAAACCTTACAATATTGATGGATGTGCCTTGGTTAAAATCCAGCATATCCCATCACAATTTGCAAAGAAACATTTGAAGAAGAAAAGAGAAATTCTCCTTCAGGTCTTGGATGGGAGAACTTGGTCTGTTACTTATAATCTCTGCAAATTTTGTGCTGGATGGAAGAAGTTTGCATTAGATAATAAATTGAAGGTGGGGGATGTATGCCATTTTGAGCTGAACAAGAGGGGAGGCCATTCACTGAAATTTAAAGTATCGATCTTTCCAGTTGCAGAAGAACAGCATTCCCCTCGATCACAAGAAGATGCGGATGGAACCACTGAATGCCTTAAAGGGGCTCACCTGACTTCTAAAACCACTGAAGCATTGAACAGAGCTGGAACCCCCGGATCTGAAAATGCCTTCTTCACCGTTATGATGAAACCTTACAGTGTTTATGATCGTTGCTTGCGTATCCCATCACACTTTGCAAATAAATATTTGAAGAAGAAAAGGGATATCGTGCTTCAAGTCTTGGATGGGAGACCTTGGTCTGTTTGTTATAATCTCTACAAATTTAGTGGTGGATGGAAGGAGTTTGCATTAGATAATAAATTGAAGGTGGGGGATGTATGCCGTGTTGAGCTGAACCAGAGTGGAGGCCTTTCACTGAAGCTGAAAGTATTGATCTTTCCAGCTGCAGAAGAACCACATTCCCCTCGATCACAAGGTAGTTGA 1458 0.4033 MACNKRNQHSAISFFKIITTTSLEAGKLKIPNGFARKYGGDMSNPMSIKPPDGTEWKLYWNEHGSDIWFQKGWKEFSKYYSLDHGHLVLFEYKDASHFGVHIFDKSTLEIEYPSHENQDEEHNPDQIDDDSVEILDKIPPCKKTKRKSPISCPQPRKKLRTSTSEDVGRRPKLQKFPKQHLVGGNQSQGTNFEESTLEMEPVHNELEDDAGGTTECLKGEHLTSKTTKPLKRAGALRFGNSFFTITMKPYNIDGCALVKIQHIPSQFAKKHLKKKREILLQVLDGRTWSVTYNLCKFCAGWKKFALDNKLKVGDVCHFELNKRGGHSLKFKVSIFPVAEEQHSPRSQEDADGTTECLKGAHLTSKTTEALNRAGTPGSENAFFTVMMKPYSVYDRCLRIPSHFANKYLKKKRDIVLQVLDGRPWSVCYNLYKFSGGWKEFALDNKLKVGDVCRVELNQSGGLSLKLKVLIFPAAEEPHSPRSQGS* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3428 485 CDD B3_DNA 242 336 IPR003340 GO:0003677
Lja2g3428 485 Gene3D - 5 107 IPR015300 -
Lja2g3428 485 ProSiteProfiles B3 DNA-binding domain profile. 382 474 IPR003340 GO:0003677
Lja2g3428 485 CDD B3_DNA 13 104 IPR003340 GO:0003677
Lja2g3428 485 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Lja2g3428 485 SUPERFAMILY DNA-binding pseudobarrel domain 377 471 IPR015300 -
Lja2g3428 485 SMART B3_2 14 106 IPR003340 GO:0003677
Lja2g3428 485 SMART B3_2 382 474 IPR003340 GO:0003677
Lja2g3428 485 SMART B3_2 242 338 IPR003340 GO:0003677
Lja2g3428 485 SUPERFAMILY DNA-binding pseudobarrel domain 9 106 IPR015300 -
Lja2g3428 485 MobiDBLite consensus disorder prediction 159 173 - -
Lja2g3428 485 ProSiteProfiles B3 DNA-binding domain profile. 263 338 IPR003340 GO:0003677
Lja2g3428 485 MobiDBLite consensus disorder prediction 138 191 - -
Lja2g3428 485 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 335 - -
Lja2g3428 485 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 350 472 - -
Lja2g3428 485 Pfam B3 DNA binding domain 242 332 IPR003340 GO:0003677
Lja2g3428 485 Pfam B3 DNA binding domain 14 105 IPR003340 GO:0003677
Lja2g3428 485 Pfam B3 DNA binding domain 382 467 IPR003340 GO:0003677
Lja2g3428 485 CDD B3_DNA 382 472 IPR003340 GO:0003677
Lja2g3428 485 Gene3D - 222 340 IPR015300 -
Lja2g3428 485 Gene3D - 362 475 IPR015300 -
Lja2g3428 485 PANTHER B3 DOMAIN-CONTAINING 350 472 - -
Lja2g3428 485 SUPERFAMILY DNA-binding pseudobarrel domain 238 335 IPR015300 -
Lja2g3428 485 PANTHER B3 DOMAIN-CONTAINING 6 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3428 Lja-Chr2 79748526 79750721 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3428 369 469 B3 DNA Binding Superfamily AT3G18990 38.889 2.32e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja2g3428 B3 2.7e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3428 - - lja:Lj0g3v0187709.1 485.723