Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3425 ATGCTTACAGTATGTTCTGTGCAGAAGCTCCCAAATGGTTTCATTAAGAAATACAGTGGTGATATGCCAAACCCAGTAATTCTCAAGCCCCCTGATAACACTAGTTGGGAGATACATTGGAGTAAACATGATTCTGATATTTGGTTTCAAAAGGGTTGGGAAGAATTTGCGAAATATTACTCCCTCTACCATGGGCACTTGGTTTTGTTTGAATTCAAGGATGCTTCTCATTTTGGGGTGCATATATTTGACAAGAGCACCCTTGAAATAGAATATCCTATGATCTATGACAATCAAGATGAAGAGAACAACAACCCTGATCAGATGAGTGACAACTCAGTTGAGATTTTGTATGAGATACCTTCTTGGAAGAAGACTAAACTGAAATCACCCATTGCATGTCCTCAACCAAGTAAGAAATTGAGAACCAGGACAAGCAAAGATGTTGGAAGAAGCCCTAAATTGCAAAACTTGTCTAAACAAGTCCAAACTATTGAAGGTATTCAGTCTCATGTTACAAACTTGGAGAAGTCAACATTGGAACCTGTCCATAACGAATTGGAGGATGGTGCAGGTGGAAGCACTGAATGTCTTAAAAGGGATCCCTTAACTTCTAAAACCACTAAAGCTTTGAACCAAGCCAGAACCTTCAAATCTAAAAATCCGTCCTTCGTGAGTGTCATGAAACCTGCCTATATTTATCGACATTCCTTGCATGTCTCATCACAATTTGCAAAAAACTATTTGAAGAAGAAGAGGGATATCATTCTTCAGGTCTTGGATGGAAGAACTTGGACTGTTAGTTATAAACTCGGCAAATTCACTGCTGGATGGAAGAAGTTTGCATCAGATAATAAATTGAAGGTTGGGGACGTTTGCCGTTTTGAGCTGAACAAGAGGGGAAGCCTTTCATTGAAAGCATTGATCTTTCCACTTGCAAGAGAACCTCATTCCCCTCAATCACAAGTTCAAGGAGATGGAGCCAATTGGAGAGTCCAGGACACTAAAAGTAAAACTGTTACTACTACCAGTAGAGGTGGGAAGGCAACTCAACAAGATTCAATGTTGATTAATCCCTTAACAAATGGAGCTCTGGATGAAGCTAACAAATTTACTTCAGAAAATCCCTGCTTCAAAGTCACAATACAACCTGATCGTGCGGGGAATTATTACAGACCGCACGTAACTCTTACCTTCATGAAAAAGTACTTAAATAAAAAGAAGAATGTGATGTTACAGTTTGGGAACAATTTGTGGCCTGTGAAGTTGCTCCATTCAGCCTCATATGGAGCCAAGTTGTCCAAAGGTTGGGCCCTATTTGCAGGAGAAAGTAAATTGGTAGCTGGAGATGTTTGTGTCTTTGAGCTCATCAACAAAGAAGATGCTGTGTTTGATGTTCATATTTTCAAAGGTCACTGTTCATATTTTACTCATGTGAAATGCAATGAGTAA 1452 0.3939 MLTVCSVQKLPNGFIKKYSGDMPNPVILKPPDNTSWEIHWSKHDSDIWFQKGWEEFAKYYSLYHGHLVLFEFKDASHFGVHIFDKSTLEIEYPMIYDNQDEENNNPDQMSDNSVEILYEIPSWKKTKLKSPIACPQPSKKLRTRTSKDVGRSPKLQNLSKQVQTIEGIQSHVTNLEKSTLEPVHNELEDGAGGSTECLKRDPLTSKTTKALNQARTFKSKNPSFVSVMKPAYIYRHSLHVSSQFAKNYLKKKRDIILQVLDGRTWTVSYKLGKFTAGWKKFASDNKLKVGDVCRFELNKRGSLSLKALIFPLAREPHSPQSQVQGDGANWRVQDTKSKTVTTTSRGGKATQQDSMLINPLTNGALDEANKFTSENPCFKVTIQPDRAGNYYRPHVTLTFMKKYLNKKKNVMLQFGNNLWPVKLLHSASYGAKLSKGWALFAGESKLVAGDVCVFELINKEDAVFDVHIFKGHCSYFTHVKCNE* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3425 483 CDD B3_DNA 222 311 IPR003340 GO:0003677
Lja2g3425 483 ProSiteProfiles B3 DNA-binding domain profile. 223 313 IPR003340 GO:0003677
Lja2g3425 483 CDD B3_DNA 376 470 IPR003340 GO:0003677
Lja2g3425 483 Pfam B3 DNA binding domain 392 470 IPR003340 GO:0003677
Lja2g3425 483 Pfam B3 DNA binding domain 224 310 IPR003340 GO:0003677
Lja2g3425 483 Pfam B3 DNA binding domain 10 85 IPR003340 GO:0003677
Lja2g3425 483 PANTHER B3 DOMAIN-CONTAINING 9 310 - -
Lja2g3425 483 PANTHER B3 DOMAIN-CONTAINING 344 470 - -
Lja2g3425 483 Gene3D - 3 87 IPR015300 -
Lja2g3425 483 ProSiteProfiles B3 DNA-binding domain profile. 1 86 IPR003340 GO:0003677
Lja2g3425 483 ProSiteProfiles B3 DNA-binding domain profile. 419 472 IPR003340 GO:0003677
Lja2g3425 483 SUPERFAMILY DNA-binding pseudobarrel domain 371 470 IPR015300 -
Lja2g3425 483 SMART B3_2 1 86 IPR003340 GO:0003677
Lja2g3425 483 SMART B3_2 224 313 IPR003340 GO:0003677
Lja2g3425 483 SMART B3_2 377 472 IPR003340 GO:0003677
Lja2g3425 483 SUPERFAMILY DNA-binding pseudobarrel domain 217 303 IPR015300 -
Lja2g3425 483 CDD B3_DNA 10 84 IPR003340 GO:0003677
Lja2g3425 483 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 310 - -
Lja2g3425 483 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 344 470 - -
Lja2g3425 483 MobiDBLite consensus disorder prediction 130 151 - -
Lja2g3425 483 SUPERFAMILY DNA-binding pseudobarrel domain 8 86 IPR015300 -
Lja2g3425 483 Gene3D - 360 472 IPR015300 -
Lja2g3425 483 Gene3D - 203 313 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3425 Lja-Chr2 79465757 79468621 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3425 364 470 B3 DNA Binding Superfamily AT3G18990 36.937 1.98e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja2g3425 B3 1.2e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3425 - - lja:Lj0g3v0187709.1 969.533