Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3424 ATGAGTAACAACAACAACATGGATCCTCTTCCCAGTCCTGAACACTCTAACCACCCTAATTTCCTACCCGCACCACCCGGAATCCCAACCCCAATTCTGACACCGAAGCTTGAACCTTTAGACGAATGGGTCACCACAACCCAAGATCCGACCCGCACCGATTTCTCCAACGGGACCCACCAATTCAACCTCAACTTCTTCGCCGATGAAACCCTAGCCGCTTCAATCGACGGCGGCAACGCCGACGACGACAACAACGGCAACTCACTGTACTCCGACTTCAACCGAGTCACCGACCTGTTCCGAACCGCGTTCACGACGGGGTTGCAGCAATGCCAGAACGATGACGTTTCGGACCCGAACTCGCGCGCGATCGTTCCGGTGCCTGCGGAGGATAGCGTCGAAGCGCCTCCGTCGGCTGTGGTCTCGGTGGCGCGGCAGCGGCGGTGGAAGGAGCTTGTGAGGGTGACGGATGCCGGCGTGGGGGAGCTTCAGCATTTCCGCGACGTGGTTCGGAGGACGAGGATGGTGTACGATTCGCTCCGGGTGCTGGCTGCGGCGGAGGAAGAGCGGAGGGTGGATACGCGGAGGGCGAGGAGCGATTTGAGGGCTTCAGGGTTGATGAGGACTTGTGGTTTGTGGCTGAATCGCGATAAGAGAATCGTTGGTGCGATTCCTGGGATTTGCATTGGTGATGTGTTTTTTTACAGAATGGAGTTGGTTGTTGTTGGTTTGCACGGTCAACCACAGGCTGGGATTGATTACTTGCCTGCTAGCATGAGTTCCAATGGTGAACCAATTGCAACGAGTGTGATAGTTTCGGGTGGTTATGAGGATGATGTGGATGAGGGTGATGTGATCATCTATTCTGGGCATGGTGGCCAGGACAAGCATTCAAGGCAGGTTTTTCATCAGAAATTGGAAGGAGGGAACCTTGCCATGGAGAGAAGCATGCATTATGGGGTCGAGGTGAGGGTTGTTCGAGGTGTTCGCTGTGAGGGCACTCTCTCTGCTTCTGGTAAGGTTTATGTTTATGATGGCTTGTATAGGATTACTGAGTGCTGGTTTGATGTTGGGAAGTCTGGTTTCGGTGTTTACAAGTATAAGCTGTGGAGGATTGAGGGTCAGCCTAAGATGGGGAGTGCGATTTTGAAGGAGGCTCTTATGCTGAGAAGGGATCCGATGTGTATTAACCCGACATATTACATGTCTCTTGATATTTCCAATAAGAAAGAAAATGTTGCTGTGAGGCTCGTTAATGACATCGATCGAAATCCCGAGCCTCTTCTTTATGAGTATCTTGTGAGGACTACTTTTCCGCAGTTTGTGTTTCATCAGAGTGGGAAGGCTACCGGTTGTGAGTGCGTGGACGGGTGTGTGGATGGATGCCTTTGTTCCATGAAGAATGGAGGGGAGTTTCCTTATAGTCAAAGTGGTGTTCTGTTGAGAGGGAAACCTTTAATATTTGAATGTGGCCCCTTTTGTAGTTGTCCTCCTCACTGTAGGAACCGTGTCACGCAGAAGGGGCTGAAAAATAGGCTTGAAGTGATTAGATCCAGGGAGACTGGTTGGGGAGTTAGGTCCTTGGACCTTATTCAAGCTGGCGCTTTTATCTGTGAGTACACAGGGGTTGTTCTGACTACAGAGCAAGCCAAAATTTTGACAATGAATGGTGATACATTGATATATCCTGGTCGGTTTTCTGAGAGGTGGGCAGAATGGGGGGATTTATCTCTGATAGACTCCACTTATGAACGTCCGAAGTATCCGTCAATTCCTCCTTTAGATTTTGCTATGGATGTATCAAGAATGAGGAATGTTGCGTGCTATATTAGTCACAGTTCAACTCCTAATGTGTTGGTTCAGTATGTTCTGTTTGATCACAATAATTTGATGTTCCCTCACCTTATGCTATTCGCAATGGAAAACATCCCTCCAATGAGAGAGCTCAGCCTTGATTATGGGGTAGCTGATGAGTTTACCGGCAAACTATCCATATGTAACTGA 2007 0.4948 MSNNNNMDPLPSPEHSNHPNFLPAPPGIPTPILTPKLEPLDEWVTTTQDPTRTDFSNGTHQFNLNFFADETLAASIDGGNADDDNNGNSLYSDFNRVTDLFRTAFTTGLQQCQNDDVSDPNSRAIVPVPAEDSVEAPPSAVVSVARQRRWKELVRVTDAGVGELQHFRDVVRRTRMVYDSLRVLAAAEEERRVDTRRARSDLRASGLMRTCGLWLNRDKRIVGAIPGICIGDVFFYRMELVVVGLHGQPQAGIDYLPASMSSNGEPIATSVIVSGGYEDDVDEGDVIIYSGHGGQDKHSRQVFHQKLEGGNLAMERSMHYGVEVRVVRGVRCEGTLSASGKVYVYDGLYRITECWFDVGKSGFGVYKYKLWRIEGQPKMGSAILKEALMLRRDPMCINPTYYMSLDISNKKENVAVRLVNDIDRNPEPLLYEYLVRTTFPQFVFHQSGKATGCECVDGCVDGCLCSMKNGGEFPYSQSGVLLRGKPLIFECGPFCSCPPHCRNRVTQKGLKNRLEVIRSRETGWGVRSLDLIQAGAFICEYTGVVLTTEQAKILTMNGDTLIYPGRFSERWAEWGDLSLIDSTYERPKYPSIPPLDFAMDVSRMRNVACYISHSSTPNVLVQYVLFDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEFTGKLSICN* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3424 668 MobiDBLite consensus disorder prediction 1 30 - -
Lja2g3424 668 ProSiteProfiles SET domain profile. 512 655 IPR001214 GO:0005515
Lja2g3424 668 ProSiteProfiles Pre-SET domain profile. 451 509 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja2g3424 668 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 32 665 - -
Lja2g3424 668 Pfam SAD/SRA domain 222 376 IPR003105 -
Lja2g3424 668 SMART set_7 512 661 IPR001214 GO:0005515
Lja2g3424 668 ProSiteProfiles YDG domain profile. 223 372 IPR003105 -
Lja2g3424 668 SMART preset_2 404 496 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja2g3424 668 Pfam SET domain 523 655 IPR001214 GO:0005515
Lja2g3424 668 MobiDBLite consensus disorder prediction 16 30 - -
Lja2g3424 668 Pfam Pre-SET motif 407 504 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja2g3424 668 Gene3D SET domain 381 668 IPR046341 -
Lja2g3424 668 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 64 668 IPR025794 GO:0016571
Lja2g3424 668 SUPERFAMILY PUA domain-like 205 385 IPR015947 -
Lja2g3424 668 SMART G9a_1 218 376 IPR003105 -
Lja2g3424 668 SUPERFAMILY SET domain 398 656 IPR046341 -
Lja2g3424 668 Gene3D - 220 380 IPR036987 -
Lja2g3424 668 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 32 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3424 Lja-Chr2 79354953 79359642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3424 170 657 Su(var)3-9 homologs AT1G73100 38.400 1.02e-101 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja2g3424 SAD_SRA 4.2e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3424 K11420 - lja:Lj0g3v0293009.1 997.267