Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3422 ATGGCTTACGTTCCCCGCGCTCGTCACTTTCCACTTTCCACTTTCCACATTCTGAGTTTTCCCTTTCAATTTCCTGACTCTCCTGATTCCACCCATTTTCTCACTCCAAAATTCTTCATTTTCATTTCAACTTTCTCTCCATTTTCTTCTTCTCTTCTCTGCCTTAGGGCACACAACACGACGATGAAGCCCGAATTGTACGAAATCTCCGATGACGAATGGGAGAATCACTCCTTCAAACCCTCACGAATTCTCAAACGACCTCGCTCTTCTTCTCCTCCTCCAATCGAGTCCTTCGCTTACAACCCCCAAGCTTCTTCCGACGACGACGACGATTGCGTCGAGATCACACGAGAATCTGCTACTTTTCCGGAGAGCCTCCACGAACTGGACGACGCCGACGGCGGAGCTCAGCCCCTGGCGAGTCGTGGCCGCCGGTTCATTATCGACGATGACGACGACGAAGACGAGGAGGACGGTGGCGACGTTGAGTTGTGCGAAGTTGAGGAAGAGGATGTGGTTGGTAGGGCTTTGCAGAAGTGCGCGAGAATCTCAGCGGAGTTGAAGGGAGAGCTGTTCGGGTCTACGGGTACCGCATGTGAGAGGTATTCGGAGGTGGAATCTTCTTCAGTCAGAATCGTAACTCAGGATGATGTTGATGTTGCGTGTGCGTCCGAGGAGGAGGATTCGGATTTTCAGCCTCTGCTCAAGCCTTATCAACTGGTTGGTGTCAATTTCTTGCTCCTGCTGTATAGGAAGGGCATTGCAGGAGCCATATTAGCAGATGAAATGGGCCTTGGCAAAACGATTCAGGCCATCACTTATTTAACTTTGTTGAAGCACTTGCATAATGATTCTGGTCCACATCTTATAGTATGTCCTGCTTCTGTATTGGAAAACTGGGAAAGGGAATTAAAGAGGTGGTGTCCATCCTTTTCCATTCTTCAATATCACGGGGCAGCACGTGCAGCATACTGCAAGGAGTTGAACTCCTTGTCTAAGGCTGGATTGCCTCCCCCATTTAATGTTCTTCTTGTGTGCTACTCGCTTTTTGAACGACACAGTGCGCAGCAGAAAGATGATCGTAAAATTCTGAAGCGTTGGAGGTGGAGCTGCGTGCTGATGGACGAGGCACATGCTTTGAAGGATAAAAATAGCTTTAGGTGGAAAAATCTAATGTCTGTCGCACGAAATGCAAACCAACGGTTGATGCTGACTGGGACCCCTCTTCAAAATGATCTACATGAGTTATGGTCACTATTGGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGATGTTGATTTAAAGAAGTTACTAAATGCAGAAGATAGAGATTTAATTGGTCGTATGAAGTCCATCTTAGGGCCATTTATTTTGCGGCGTCTGAAATCTGATGTGATGCAGCAACTTGTTCCGAAAATACAGCAGGTTGAATATGTTGTAATGGAAAAGCAACAGGAAAGTGCTTACAAGGAAGCCATTGAGGAGTACCGTGCTGTTTCACAGGCTCGGATGGCCAAATGTTCTGAGCTTAATTCGAACAATGTTCTTGAAGTTCTTCCTCGACGACAAATAAATAACTATTTTGTTCAGTTTCGCAAGATTGCAAACCATCCTTTGTTGATAAGGCGAATTTATAGTGATGAGGATGTCATTCGCTTTGCCAGGAAGCTACATCCAGTAGGTGCTTTTGGCTTTGAATGCACTTTGGACAGAGTTATAGAGGAACTTAAAAGTTACAATGACTTCTCTATTCACTGGCTCTTACGTCATTATCGTGTCAATGATAGAAAAGGGATCCTTTCAGATAAGCATGTCATGCTTTCTGCAAAATGTCGGGCCTTAGCAGAACTTCTTCCTTCACTAAAGAAGGGTGGTCATCGTGCCTTGATTTTTAGTCAATGGACATCTATGCTTGACATATTGGAGTGGAATTTGGACGTCATTGGTTTGACCTACAGACGACTTGATGGCAGTACACAGGTAGCAGAGAGGCAAACAATAGTTGATACGTTCAATAATGATACTTCAATATTTGCGTGCTTGCTTTCCACAAGAGCTGGTGGACAAGGCTTGAACTTAACAGGAGCTGATACTGTTGTAATTCATGACATGGATTTTAATCCACAGATAGATAGACAAGCAGAAGATCGCTGTCATCGAATTGGTCAAACAAAGCCTGTAACCATATATCGGCTGGTGACGAAAGGAACAGTTGATGAAAATGTGTACGAGATTGCCAAGAGAAAGCTAGTATTAGATGCTGCTGTTCTGGAGACCATGGAGGAGATTAATGAAGGTGACATGCCTGAGAAGACCATGGGAGAGATATTGTCCTCAATTTTGCTGAATTAA 2358 0.447 MAYVPRARHFPLSTFHILSFPFQFPDSPDSTHFLTPKFFIFISTFSPFSSSLLCLRAHNTTMKPELYEISDDEWENHSFKPSRILKRPRSSSPPPIESFAYNPQASSDDDDDCVEITRESATFPESLHELDDADGGAQPLASRGRRFIIDDDDDEDEEDGGDVELCEVEEEDVVGRALQKCARISAELKGELFGSTGTACERYSEVESSSVRIVTQDDVDVACASEEEDSDFQPLLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLTLLKHLHNDSGPHLIVCPASVLENWERELKRWCPSFSILQYHGAARAAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVVMEKQQESAYKEAIEEYRAVSQARMAKCSELNSNNVLEVLPRRQINNYFVQFRKIANHPLLIRRIYSDEDVIRFARKLHPVGAFGFECTLDRVIEELKSYNDFSIHWLLRHYRVNDRKGILSDKHVMLSAKCRALAELLPSLKKGGHRALIFSQWTSMLDILEWNLDVIGLTYRRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLETMEEINEGDMPEKTMGEILSSILLN* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3422 785 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 71 783 - -
Lja2g3422 785 Pfam Helicase conserved C-terminal domain 612 724 IPR001650 -
Lja2g3422 785 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 249 427 IPR014001 -
Lja2g3422 785 PANTHER SNF2/RAD54 HELICASE FAMILY 71 783 - -
Lja2g3422 785 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 615 765 IPR001650 -
Lja2g3422 785 CDD SF2_C_SNF 602 735 - -
Lja2g3422 785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 766 IPR027417 -
Lja2g3422 785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 462 IPR027417 -
Lja2g3422 785 Pfam SNF2-related domain 255 542 IPR000330 GO:0005524|GO:0140658
Lja2g3422 785 Gene3D - 587 783 IPR027417 -
Lja2g3422 785 MobiDBLite consensus disorder prediction 84 111 - -
Lja2g3422 785 SMART helicmild6 641 724 IPR001650 -
Lja2g3422 785 CDD DEXHc_Snf 236 429 - -
Lja2g3422 785 Gene3D - 208 487 IPR038718 -
Lja2g3422 785 SMART ultradead3 232 437 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3422 Lja-Chr2 79298698 79319034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3422 257 775 RAD5 or RAD16-like Gene Family AT5G22750 26.291 1.88e-45 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja2g3422 SNF2_N 5.7e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3422 K14439 - gmx:100806323 1242.64