Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3420 ATGGCTGCTTCTTCCTCACCATTCTTGGAAATCAGACAAGAAAATCAAAGTCAGAATACACAACAACACCAGTCCTCTTCATCAACTGCTGCTCCACCTGTAGTTCCTCAGAAGAAGAGGAGGAATCATCAACCTGGAACACCATATCCAGATTCTGAGGTGATAGCACTATCTCCCAAGACACTAATGGCAACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGGGAGCAAAATTTACAGCTCCACAGAAGAGGACACAACTTGCCTTGGAAACTAAAGCAGAAGAATACAAAAGAGCAGGCAAAGAGAAAGGTTTATCTCTGTCCTGAACCCACTTGTGTCCACCATGACCCTTCACGGGCTCTTGGAGACCTCACTGGGATCAAGAAGCACTTCTCTCGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCTAAGAAGTATGCTGTTCAATCAGATTGGAAAGCACATTCTAAGACTTGTGGTACAAGAGAGTATAGATGTGACTGTGGCACTCTCTTCTCCAGGCGTGACAGTTTTATTACTCATAGAGCCTTTTGTGATGCGTTAGCACATGAGAGTGCAAGGCACCCTTCCAACCTGAACCCTCTGGGAACCCATCTCTATGGCACCAACCACATGAGCTTAGGCCTATCCCATGTGGGTACCCAACTTCAGAACCAAAACAGTATCTTAACCCTAGGCAATGCTGCTGCAGGTGCACCAAAATTTGAGCACTTGATCTCACCTTTCCAACAGTCATCATTTGCGCACTCATCATCACCACAGTCATTGTCTTCCTCATCACCTTTCTTCATGGCTGACCCAAATCAAGGGATTCAAGACCTTCAATCTCATCATCACCAAGGACAATTCTCGAACAAGCAGCTGCATGGTCTTATGCAGCTCCCTGATTTTCAAGGTCCCACCACCAACAACACCAGTACTTCTGCACCATCATCAGTTTCTGCTAATTCAGCTGCAAACTTTTTCAACCTCAGCTTCTTCCCAAATAGTAATAGCAACGACAGCACCATCCCTGATCAGTTCAACAGTATAACTGCAGGAACAACACTCTACACAAATAGCCCTGGCAGTAGCAATCATCACCAAGTTGGTTCAGCTTTGTCTTCAATCTTTGGCAATTCATCACTGCAACAAGAGAACAACATGCCCCCGCACATGTCTGCAACTGCATTGCTTCAGAAAGCTTCACAAATGGGCTTATCCACAACAACCATTAATAATGGTTCCTCTCTACTAAGACGAATGGAGAGCTCCTCCACCAATGGTTCAGAATCTGAACTCAACAATTTTGCTGCCACTTTTGGAAGTGATCATAGTAAGGGAGAAGGTATAAGATCAAGCATGGAAAATGACCACCAACATCATCTACATGGGATAATGAACTCTCTTGCGAACCGAAACAACAATTCGATGTTTGGCCATGTGAAAGGGAATGAAAACAATAATGTTTCTCATTTTCACATCATGGAGGAGGCTAAAAGATTGTCATCACAAAATCTGGGTGGTGTGTGCTTTGGAGGATCTGATAAGTTGACTTTGGACTTTCTTGGTGTTAATGGAGGAATTGTGAGGAACATGAGCGGTGGGTTTTCACAAAGAGAGCAACTAGACTCCATTTTGGATCCTAAACTTGAATCAACACAAGCAAATCAACAATTTGGAAGCTCATCATTGCAATAA 1725 0.4383 MAASSSPFLEIRQENQSQNTQQHQSSSSTAAPPVVPQKKRRNHQPGTPYPDSEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKNTKEQAKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARHPSNLNPLGTHLYGTNHMSLGLSHVGTQLQNQNSILTLGNAAAGAPKFEHLISPFQQSSFAHSSSPQSLSSSSPFFMADPNQGIQDLQSHHHQGQFSNKQLHGLMQLPDFQGPTTNNTSTSAPSSVSANSAANFFNLSFFPNSNSNDSTIPDQFNSITAGTTLYTNSPGSSNHHQVGSALSSIFGNSSLQQENNMPPHMSATALLQKASQMGLSTTTINNGSSLLRRMESSSTNGSESELNNFAATFGSDHSKGEGIRSSMENDHQHHLHGIMNSLANRNNNSMFGHVKGNENNNVSHFHIMEEAKRLSSQNLGGVCFGGSDKLTLDFLGVNGGIVRNMSGGFSQREQLDSILDPKLESTQANQQFGSSSLQ* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3420 574 Gene3D Classic Zinc Finger 51 115 - -
Lja2g3420 574 MobiDBLite consensus disorder prediction 264 284 - -
Lja2g3420 574 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
Lja2g3420 574 SMART c2h2final6 110 140 IPR013087 -
Lja2g3420 574 SMART c2h2final6 145 165 IPR013087 -
Lja2g3420 574 SMART c2h2final6 68 90 IPR013087 -
Lja2g3420 574 MobiDBLite consensus disorder prediction 1 33 - -
Lja2g3420 574 Gene3D Classic Zinc Finger 123 202 - -
Lja2g3420 574 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 2 550 - -
Lja2g3420 574 MobiDBLite consensus disorder prediction 308 327 - -
Lja2g3420 574 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Lja2g3420 574 MobiDBLite consensus disorder prediction 1 53 - -
Lja2g3420 574 SUPERFAMILY beta-beta-alpha zinc fingers 67 165 IPR036236 -
Lja2g3420 574 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Lja2g3420 574 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 2 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3420 Lja-Chr2 79263846 79269317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3420 37 229 IDZ Gene Family AT2G02070 80.392 1.21e-113 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja2g3420 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3420 K25870 - gmx:100806198 638.262