Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3419 ATGGAAGCACCTTTTTCTGAAGCATCGTTCCATGGAATCACAGAAGAGGATCAGAAAAATCAGAATAACCAACAGCATTATTCTTCAACACCATCTTCATCAAGAACTCCACCTGCACCACACAAGAAAAGGAGAAACCAACCTGGAACACCATATCCAGATGCTGAGGTGATAGCACTATCTCCCAAGACACTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGATTCCAAAGAGAGCAAAATTTGCAGCTCCACAGAAGAGGACACAACTTGCCTTGGAAGCTAAAGCAGAAGAATTCAAAAGATCAGGCAAAGAGAAAGGTTTATCTGTGTCCTGAACCCACTTGTGTACACCATGACCCTTCAAGGGCTCTGGGAGATCTCACTGGGATTAAGAAGCACTTCTCTCGGAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCCCTAAGAAGTATGCTGTTCAATCAGATTGGAAAGCACATTCCAAGACTTGTGGCACAAAAGAGTATAGATGTGACTGTGGCACTCTCTTCTCCAGAAGAGACAGTTTCATCACCCACAGGGCCTTCTGTGATGCACCGGCTCAAGAGAATAATACATCACAACCACCCAACAACATGAGCAGTGCAATCAGCAGCCAACTCTATGGAAGTAGCAGCAACAACAACCACATGTCCTTAGCCTTATCTCAAATGTGTCCACAGATCCATCACCAAACCAACAACAACAACCAATCCGCCAGTGACCTGTTGCATTTTGGTGGAGCAAATATTGCAAAGACTGAAGAATCCAACCACAATTTTCCATCAACACCATCCCTTGGCTTTTCATTTAAACCTTCACTCTATCAAACCCCTTCTTCAATGTTCTTCATGCCACCAGAATCAAACCAAAACCAAAATTACCATCATTTTGGTGGGACTGATTCCAAGCCATTCCAGGGGCTAATACAATTGTCTGAACTTCACAACAACAATAGCTCCTTCTCTGAACATTTCAACATTTACAATATTGAAGGGTCCAGCTTCTTCTCTGAAGGGACATGTTCTGTAATGGGTGATCATCATCAACATCACCAATTCCAAACAAGCTCCACCACAGTCCCTTCTCTCTTCAGCAGCACTTTTCTCCACAGCAGCAACATCACTCCTCACCTGTCAGCAACAGCAATGCTTCAGAAAGCTGCTCAAATGGCTGCAAGTTCCAGCAACAACACTTCCTCAAGTTCTGATCACAAGCCAAACTATGGAAACATGCAGGACCAGATGATGAACTCTTCCATTTTTGGAGCATCTGATGATCATGATTATGGCTTGAAGGAAGAAGAACCGAAACACCTGCAGAAGATGATGAGTGCTGGAGGCTCTGAGAGGCTCAGTACTAGGGACTTTTTAGGAGTTGGTCAGGATCATGTAGTGAGAAGCTTGAGTGAAGGAGTTTCAGAGGAAGATCCACAACAACAGCAGCAACATGGCTTCTTCAACTTGAGCTCTTTGGAAGCAGAGAGAAATGGAAGCAGAGCAACAGGTCAGTGTTTCGGAGATGGAGGGAACTTTCAGTGA 1578 0.4417 MEAPFSEASFHGITEEDQKNQNNQQHYSSTPSSSRTPPAPHKKRRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKNSKDQAKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCPKKYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDAPAQENNTSQPPNNMSSAISSQLYGSSSNNNHMSLALSQMCPQIHHQTNNNNQSASDLLHFGGANIAKTEESNHNFPSTPSLGFSFKPSLYQTPSSMFFMPPESNQNQNYHHFGGTDSKPFQGLIQLSELHNNNSSFSEHFNIYNIEGSSFFSEGTCSVMGDHHQHHQFQTSSTTVPSLFSSTFLHSSNITPHLSATAMLQKAAQMAASSSNNTSSSSDHKPNYGNMQDQMMNSSIFGASDDHDYGLKEEEPKHLQKMMSAGGSERLSTRDFLGVGQDHVVRSLSEGVSEEDPQQQQQHGFFNLSSLEAERNGSRATGQCFGDGGNFQ* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3419 525 Gene3D Classic Zinc Finger 54 118 - -
Lja2g3419 525 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 442 - -
Lja2g3419 525 MobiDBLite consensus disorder prediction 200 220 - -
Lja2g3419 525 Gene3D Classic Zinc Finger 126 206 - -
Lja2g3419 525 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Lja2g3419 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Lja2g3419 525 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Lja2g3419 525 SUPERFAMILY beta-beta-alpha zinc fingers 70 168 IPR036236 -
Lja2g3419 525 SMART c2h2final6 148 168 IPR013087 -
Lja2g3419 525 SMART c2h2final6 71 93 IPR013087 -
Lja2g3419 525 SMART c2h2final6 113 143 IPR013087 -
Lja2g3419 525 MobiDBLite consensus disorder prediction 1 54 - -
Lja2g3419 525 MobiDBLite consensus disorder prediction 15 37 - -
Lja2g3419 525 MobiDBLite consensus disorder prediction 402 427 - -
Lja2g3419 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3419 Lja-Chr2 79078500 79083221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3419 27 474 IDZ Gene Family AT5G66730 42.766 1.61e-106 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja2g3419 zf-C2H2_jaz 3.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3419 K25870 - lja:Lj0g3v0351859.1 909.442