Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3413 ATGGAAAAAGTGGCTCCTCCATTACCTCCTATGGCAGCGGTGCACGGTTTATTTTACGATCCGGCATCAACGGCGGCGAGCAAGAAGCGCGATCTGTCGTACGATGTGGGTCGCGTGACGGAGAATTGGAACCCTAAGGAATGGAATTGGGACAGCGTGAGATTCATGGCGAAACCGTCAGGTACGGTCACATCACGAGGAGGAGGAGGAGGAGGGGAAGACGGAGAGGGTTTAGGGTTGAAGCTGAACCTCGGCGGCGCGAACAAGAGGGTGCGCTCGGGGTCACCTGGAACGGCGTCGTACCCGATGTGTCAAGTGGATAACTGCGGCGAGGATCTGACGAGGGCGAAGGACTACCACCGGAGGCACAAGGTGTGCGAGGCGCATAGCAAGGCATCGAAGGCGCTCGTTGGCGTTCAGATGCAGAGGTTCTGTCAGCAGTGCAGCAGGTTCCATCCGCTGCCGGAGTTCGACGAGGGGAAGCGGAGTTGTCGCCGGAGGCTCGCCGGGCATAATCGGCGACGGAGGAAGACCCAGCCGGAGGACGTTGCATCGACGACGGTGGCGACAGCGAGCCCCGCCGCCGCCAATTTGGAAATTTTCAACTTGTTGACTGCGGCAATAACTGGAGGGTCGCAAGGAAAATTTGAGGAAAGAAGGTCCCAAGTTCCAGATAAGGAGCAGCTTGTTCAGATTCTTAATAGGATACCTTTGCCTGCTGATCTGACAGCTAAGTTGCTGGATGTTGGAAATGTCAATGCAAAAAGTGATCAGGTGCCAATGCAAACTTCACCCTCCTATAGTCATCATGATAACCAACTGAACCACACCCCTTCTGCGCCCTTAACTAAGGACTTGCTTGGTGTTCTTTCCACCACTCTTTCCACGCCTTCTCCCAGTGCTGTTTCATTACATTCTCAAAATGGCAGCCTCAGCAGCAATGTCAGTGGTGATAAGTCTAGGACTAGTGCTGACCACACAAGAGGACAGCAATTCACTGGGGTTGGTGGAGAAAGAAGCAGTGGCAGTTCTCAGTCTCCGGTTGAAGATTCAGATAGCCAGGAGGATGTCCGAGTTAATTTACCCCTGCAACTTTTTAGCTCCTCTCCAGAAGATGAAAGCCTGCCAAAGAAGGCATCTTCGCGAAAGTATTTCTCTTCGGACAGTAGTAACCCTATGGAAGAGAGGTCGCCAACGTCATCTCCTCCCATTGTGGAGATGCAGTTTGGTTTGCGGGGTGGGGATAGAGTCCTCAAGCCCGAAAGCATTTCATCTGCAAGGGGAGGTAATGCAAATAAGGAAGCTAACCGAATTTATGGTTGTGATATCTCTCTTGATCTCTTTAAAGGGTCAAATAACAGGATCCAACAACCTAGTTCACTTCGAAGTGTTCCATTTCAAGCTGGGTATACATCTTCGAGCTCTGATCATTCACCTCCCAGTTTAAATTCTGATGCTCAGGATCGTACCGGAAGAATAATGTTTAAACTATTTGACAAGCATCCTAGCCATTTCCCTAGAACATTGCGAACGCAGATTTATAATTGGCTTTCAAATAGGCCATCAGACTTAGAGAGCTACATAAGACCTGGCTGTGTGGTTCTATCAATTTATGCTACAATGTCTTCTTCTGCGTGGGAGCAACTAGAAGAAAACTTCCTCCAACATGTTCATTCTTTAATTCAAAATTCAGATTCTGACTTTTGGAGAGGTGGAAGATTTCTTGTTCATTGTGGCAGTCAGTTAGCATCGCATAAAGATGGAAAGATACGCTTGTGCAAACCATGGAGAACATGGAGGTCTCCAGAGTTGATATCTGCGTCTCCTTTGGCAATTGTTAGTGGTCAAGAAACCACCATTTCATTGAAGGGTAGAAACCTGTCAACTCCTGGCACAAAGGTTCATTGCACTGGCACTGGCTGTTACACAACAGCTGAAGTTACAGTATCTGCATATCCTGGTATGGCCTACGAGGAGATAAAACTGGATGGTTTTAAAGTTCAGAATGCAATTCCTGGTATTCTGGGGCGCTGTTTCATTGAGGTTGAAAATGGTTTCAAGGGTAACAGTTTTCCATTGATAATTGCTGATTCAACCATTTGCAAAGAATTGAAACCACTTGAGTCTGAATTTTATGAGGAAAAAACATGTGATGCCATCTCAGAGGAACATGAATATCATTTTGGGAGGCCTAGGTCAAGGGAGGAGGCGTTGCACTTTCTGAATGAGCTTGGCTGGCTGTTCCAAAGACAACAATTCCTAAATGTGCATGAGGGTCCAGATTATTCGCTTAACAGGTTCAAATATTTACTCACGTTTTCGGTGGAAAGAAACTGTTGTATGCTAGTAAAAACCCTGCTGGATATCCTGGTTAAAGAACACACGGAAGGGGAATGGTTGTCAACAAGGTCGATGGAGATGCTGAATGCAATCCAACTCTTAAATAGAGCAGTGAAAAGAAAGTACACTGGCATGATTGATTTGCTCATCCACTACTCTGTTCCTTGCAAAAATGACACATCAAGGATGTATGTATTTCCACCGAATCTTGAGGGCCCTGGTGGCATCACCCCCTTGCACTTGGCAGCATGCACGTCAAGTTCTGAAGGCCTAATCGACTCTTTAACAAATGACCCACAGGAGATTGGGTTGAAGTGCTGGGAGTCCCTTGCAGATGCAAATGGGCAGACTCCGCATGCCTATGCCATGATGAGGAATAATCACTCTTATAATGAGCTGGTTGCCCGTAAACTTGCTGATAGACAAAGAGGTGAAATTTCTCTTAGAATTGACACTGCGATAGAACAACAGTCATTTAGAGTTGAGCTTGTGCAAAAGCAAAGCAACCAACTCCAACGAGGTGAGAATTCTTGTGCCAAGTGTGCAATTGCGGAAACTCACTACAACAGAAGAATTTCAGGTTCAAAGGGCTGGCTTCACCGTCCCTTTATTCATTCGATACTTGCTGTTGCTGCTGTTTGTGTATGTGTTTGTGTGTTCTTCCGAGGAACCCCTTTCGTAGGCTCAGAGGGTCCCTTCAGGTGGGAAAATTTGGATTATGGCACAATGTAA 3072 0.4707 MEKVAPPLPPMAAVHGLFYDPASTAASKKRDLSYDVGRVTENWNPKEWNWDSVRFMAKPSGTVTSRGGGGGGEDGEGLGLKLNLGGANKRVRSGSPGTASYPMCQVDNCGEDLTRAKDYHRRHKVCEAHSKASKALVGVQMQRFCQQCSRFHPLPEFDEGKRSCRRRLAGHNRRRRKTQPEDVASTTVATASPAAANLEIFNLLTAAITGGSQGKFEERRSQVPDKEQLVQILNRIPLPADLTAKLLDVGNVNAKSDQVPMQTSPSYSHHDNQLNHTPSAPLTKDLLGVLSTTLSTPSPSAVSLHSQNGSLSSNVSGDKSRTSADHTRGQQFTGVGGERSSGSSQSPVEDSDSQEDVRVNLPLQLFSSSPEDESLPKKASSRKYFSSDSSNPMEERSPTSSPPIVEMQFGLRGGDRVLKPESISSARGGNANKEANRIYGCDISLDLFKGSNNRIQQPSSLRSVPFQAGYTSSSSDHSPPSLNSDAQDRTGRIMFKLFDKHPSHFPRTLRTQIYNWLSNRPSDLESYIRPGCVVLSIYATMSSSAWEQLEENFLQHVHSLIQNSDSDFWRGGRFLVHCGSQLASHKDGKIRLCKPWRTWRSPELISASPLAIVSGQETTISLKGRNLSTPGTKVHCTGTGCYTTAEVTVSAYPGMAYEEIKLDGFKVQNAIPGILGRCFIEVENGFKGNSFPLIIADSTICKELKPLESEFYEEKTCDAISEEHEYHFGRPRSREEALHFLNELGWLFQRQQFLNVHEGPDYSLNRFKYLLTFSVERNCCMLVKTLLDILVKEHTEGEWLSTRSMEMLNAIQLLNRAVKRKYTGMIDLLIHYSVPCKNDTSRMYVFPPNLEGPGGITPLHLAACTSSSEGLIDSLTNDPQEIGLKCWESLADANGQTPHAYAMMRNNHSYNELVARKLADRQRGEISLRIDTAIEQQSFRVELVQKQSNQLQRGENSCAKCAIAETHYNRRISGSKGWLHRPFIHSILAVAAVCVCVCVFFRGTPFVGSEGPFRWENLDYGTM* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3413 1023 Gene3D - 94 165 IPR036893 GO:0003677|GO:0005634
Lja2g3413 1023 ProSiteProfiles Zinc finger SBP-type profile. 101 178 IPR004333 GO:0003677
Lja2g3413 1023 MobiDBLite consensus disorder prediction 294 350 - -
Lja2g3413 1023 MobiDBLite consensus disorder prediction 456 486 - -
Lja2g3413 1023 SUPERFAMILY SBT domain 102 182 IPR036893 GO:0003677|GO:0005634
Lja2g3413 1023 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 28 1023 - -
Lja2g3413 1023 Pfam SBP domain 104 177 IPR004333 GO:0003677
Lja2g3413 1023 MobiDBLite consensus disorder prediction 357 404 - -
Lja2g3413 1023 SUPERFAMILY Ankyrin repeat 771 920 IPR036770 -
Lja2g3413 1023 MobiDBLite consensus disorder prediction 256 282 - -
Lja2g3413 1023 MobiDBLite consensus disorder prediction 294 407 - -
Lja2g3413 1023 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 1023 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3413 Lja-Chr2 78781429 78788455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3413 28 1023 SBP-box Gene Family AT1G20980 52.536 0.0 950
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lja2g3413 SBP 5.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3413 - - gmx:100812180 1483.39