Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3399 ATGTTCTCTAGTGCCACCTTATTCACTGATGAACCTCGTGAACAACATCGAGAGGAAACAACATATGATATTGGAATCTTGGAGAAGAAGTTAAAGTTGTTGATAAAGAAAATCAAGGATGAGCGAAAACAATCGATTAAAGAAAAAATTAAGAGGAATGAGGAGAATATACAATGTCAGGTTTCTACTGTCATCTCTGCAATATCAAGAAAGGACTCGTTACAAGCAGACAGAAATACCAATCAAATGCTTTCTTCAAGAATTAACCAACCTTTATGTAAGCTCAATGGTTTCTTTCAAGGTTTGGGAGAGAAAGATGACATCTACATTCACAATGTACCATTTGTGACAACTATCAAGATTCCATACATTGAAAAATTACCACCCTTTACAAGTTGGGTTTATTTGGCTAGAAATCAGAAAATGGTGGAAGATGAATCAGTTATCGGAAGAATACAAATATATTATGATAAAAAAGAAGGTGAGACAAAGATAGTCAGTGACAGTGACGGTGACAATGACGAGGATTTACAGGAACCTGAGGAAGCTAAGCATGACTTTTCACAGGGCGAAGACCAATTTCTCTGGATGGCATTTGAGGAAAATGGGTTAACTGAGGATGTGTTGACTATGGTTAGCGAGTATGTTGGGTGTACCATTTCAAAAATTCAGGATAGGTATAAACATCTCAAGGAAGAGAACATGAGAAGGATGAATCAACATTCTGAATATTTTGGAGTGACAGAATCTAATTTTGGCATATGTTTGGAGAAAAGCTTGAGTGCTTCTTTAGATACTCTTGATAACATATTCTGCCGCCAATGCTTAGTTTATCATTGTCCTCTACATGGTTGTTCTCAACCTTTAATATATCCTAGTGAAAAGCAACTATTTTGGTTTGAGCCTGAAGGTGACAAGAAACCATGTAGTGATCAGTGTTACCTTCAGTTCAAGGATATCAATGTTTTATTACAAGATACTAGTCAAGAGTCTTTACAGGGTGAAAAAAGTAAAACAGTGGAAGAGGTAGATGTGATATTAGAACCTTTTGGTGTAAAAGAGACTGGTGATCAGAGTAATAAAGCCATCTTGCAGAAAGAAAGACACAATTATATTCATAATGATCTCAAATCAGATGTTCCTATATTTAAAGGTAGCATATGTGATGGCGAGCATGAGAAGGGTATTGAGAATGGACAACAAGATGTCACAAAGGCGATAGAATTTGAGCAGTTGTCCCATTCAATGGAGTTGCAAGTTGATGGCATGCTAGGGGTCGCAGACTGGAAACCTCTTGAGAAAGAATTGTATTTGAAGGGAGTAGAAATCTTTGGAAGCAATAGTTGCTTAATATCCCGAAACTTACTTTCTGGCTTGAAGACTTGTATGGAAGTAACTAAGTACATGTACGCTGGTGAAATGTCCACGGCCAATGGATCCATACTAAGTTCAAGCATGGACAAAAATCAAGAAATGGATGCAACGTGCAAGGACCAAAAGAAGCCACAAAGGTCACGGTTGCTGTGGAAAAAGAAGAAAACTAAGAAGTTTAGGCATGCTTCAAAGTCTGGCCTCCCATCTACGTGGACAAGAATTAACAAGGGGAAACACCATATTTTTAAGCAGTATACGCCTTGTGAGTGCCAGGGAATGTGTGGAAAGCAATGCCCTTGTATTCAGGCTGGAACTTGCTGTGAAAAGTATTGTGGATGTTCAAAGCTCTGCAGAAATCGATTCAGAGGATGTCAATGTGCAAAGAGTCAATGTAGAAATCGACATTGTCCATGCTTTGCTGCAAACCGGGAATGTGACCCAGATGTCTGTCGAAATTGTTGGATTAGTTGTGGCGATGGTTCATTAGGGGAGCCACCTCGACGTGAAGATGGTCAGTGTGGAAATATGTTGCTTCTTTTAAGGCAACGTCAAAGGATTCTATTGGGAAAATCTGATATTGCAGGATGGGGAGCCTTTTTAAAGCACCCCGTGAACAAAAATGATTTCCTAGGAGAGTACACAGGTGAATTGGTGTCTGATACAGAAGCAGATGAGCGTGGGAAAGTATATTATAAAATAAACACCTCTTACATTTTCAACTTGAATGACCAGTACGCTCTCGATGCTTACCGCAAAGGAAACAAGTTGAAATTCGCAAACCACTCTTCAAAACCCAATTGTTATGCTAAGGTGCTTCTTGTTGCCGGGGATTATCGTGTAGGCATATTTGCAAAGGAACGTATTGAAGCTGGTGAAGAGATTTTCTATGATTATCACTACGAACCAGATCTTTCACCAGCTTGGGCTCTTAAAGACAAGGGTTCAAGTTCAAGTAGAGGCGAATCAAAAGTTTCTCGAGGAAGGGCAAAGAAACACCCTTCTTATTGA 2382 0.3908 MFSSATLFTDEPREQHREETTYDIGILEKKLKLLIKKIKDERKQSIKEKIKRNEENIQCQVSTVISAISRKDSLQADRNTNQMLSSRINQPLCKLNGFFQGLGEKDDIYIHNVPFVTTIKIPYIEKLPPFTSWVYLARNQKMVEDESVIGRIQIYYDKKEGETKIVSDSDGDNDEDLQEPEEAKHDFSQGEDQFLWMAFEENGLTEDVLTMVSEYVGCTISKIQDRYKHLKEENMRRMNQHSEYFGVTESNFGICLEKSLSASLDTLDNIFCRQCLVYHCPLHGCSQPLIYPSEKQLFWFEPEGDKKPCSDQCYLQFKDINVLLQDTSQESLQGEKSKTVEEVDVILEPFGVKETGDQSNKAILQKERHNYIHNDLKSDVPIFKGSICDGEHEKGIENGQQDVTKAIEFEQLSHSMELQVDGMLGVADWKPLEKELYLKGVEIFGSNSCLISRNLLSGLKTCMEVTKYMYAGEMSTANGSILSSSMDKNQEMDATCKDQKKPQRSRLLWKKKKTKKFRHASKSGLPSTWTRINKGKHHIFKQYTPCECQGMCGKQCPCIQAGTCCEKYCGCSKLCRNRFRGCQCAKSQCRNRHCPCFAANRECDPDVCRNCWISCGDGSLGEPPRREDGQCGNMLLLLRQRQRILLGKSDIAGWGAFLKHPVNKNDFLGEYTGELVSDTEADERGKVYYKINTSYIFNLNDQYALDAYRKGNKLKFANHSSKPNCYAKVLLVAGDYRVGIFAKERIEAGEEIFYDYHYEPDLSPAWALKDKGSSSSRGESKVSRGRAKKHPSY* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3399 793 MobiDBLite consensus disorder prediction 769 793 - -
Lja2g3399 793 SUPERFAMILY SET domain 538 759 IPR046341 -
Lja2g3399 793 CDD SET_EZH 642 758 - -
Lja2g3399 793 SMART set_7 642 763 IPR001214 GO:0005515
Lja2g3399 793 MobiDBLite consensus disorder prediction 164 185 - -
Lja2g3399 793 ProSiteProfiles CXC domain profile. 525 628 IPR026489 -
Lja2g3399 793 Coils Coil 24 44 - -
Lja2g3399 793 SMART CXC_2 577 614 IPR033467 -
Lja2g3399 793 ProSiteProfiles SET domain profile. 642 757 IPR001214 GO:0005515
Lja2g3399 793 Pfam SET domain 653 756 IPR001214 GO:0005515
Lja2g3399 793 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 16 790 IPR045318 GO:0006338|GO:0018024
Lja2g3399 793 Gene3D SET domain 543 759 IPR046341 -
Lja2g3399 793 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 16 790 - -
Lja2g3399 793 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 793 IPR025778 GO:0031519
Lja2g3399 793 Pfam CXC domain 581 612 IPR041355 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3399 Lja-Chr2 78127076 78141278 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3399 631 760 C2H2 Transcription Factor Family AT2G23740 31.293 3.38e-12 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja2g3399 SET 2.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3399 - K11430 pvu:PHAVU_007G213900g 904.049