Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3387 ATGTCACGCCCTTGTTTCCACAAGCTTGTTCTGCCCTCAACCCTTCAATCCAGACAACTGGGGATTCCGGACAATTTTCTGAGGAAATATGGCGGTCAGCTTTCAACAATTGCTACCCTCACTGTTCCAGATGGTACTGTTTGGCGTGTAGGGTTAAAGAAGGCCGACAACAGAATTTGGTTTGCTGATGGTTGGCAAGAATTTGTTCAACGCTACACCATTGGCATTGGATACTTTTTAGTATTCATGTATGAAGGGAATTCATCTTTCATTGTTCATATTTTCAATATGAGCACTTCTGAGGTGAATTATCAGTCTGCAGTGAGAAGCCGTAATGAAGGGCCTGTCTTTACGAATTATCATCATATTTTTGTCGAAATGGAAGATACAGACTCCTTCGAATTCATGGATTCCTCTCCTTCAAACCTTACTCCTGGTTCATTGCAAAACAAGGTTTTTGGTGGATCTGTAGATCAACTGACACCTGGGAAGAATCAATCTCCTGCACGGCAGAATTTGTTTAATGGTGGGTCTAAACTCAATCGTGTGAACTGGGGAGATAGTGGGAGTCCTTTTCCTTCAAAGGATGCCAATTCACAGGGCAATCACTCAACCAGAGATATAGGTGTTCAGTTTAATGCTGTTGAATTTAAAAGGTCTACTGAAGAATTGAAATTGCGTTATCCTAACAATGAGGAAGGGGTTAGCAAAACTGTGAAAAGGAAGAGGAAGTCTGAACCAAAAACTGTAGATGGTCAGGAACCTTCTGCTGAAAATGAAGAGGAGGCAGAAATGCGCTATAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACCGTGACTGCGGAGGAAAGAGAGAGGGCAATTAATGATGCGAAAGCATTTGAACCAGCTAATCCTTTCTGTCGAGTTGTCCTTCGACCCTCCTATTTATATAGGGGATGCATAATGTATCTGCCTTCCTGCTTTGCAGAAAAGAATTTGAATGGGGTTTCGGGATTCATCAAACTTCAGGTTGCCGATGGGAGACAGTGGCCAGTTCGCTGCCTATATAGAGGAGGTCGAGCAAAGTTAAGCCAGGGTTGGTTTGAATTCACCTTAGAGAACAATTTAGGGGAAGGGGATGTCTGTGTGTTTGAGCTGCTCAGAACGAGGGATGTAGTGCTGCAAGTTACTTTATTTCGTTTAACTGAAGAAGTGGGGTTGTTAGAGGCTCCTCCTATGCAGCAGCCCAGTCCAAATGTGAGCCACTCTAAACTGTTGAACCCTCACTTGCAGCATCGCGTCAGCACAACCAAAATGGTTAGAAATTAG 1314 0.4323 MSRPCFHKLVLPSTLQSRQLGIPDNFLRKYGGQLSTIATLTVPDGTVWRVGLKKADNRIWFADGWQEFVQRYTIGIGYFLVFMYEGNSSFIVHIFNMSTSEVNYQSAVRSRNEGPVFTNYHHIFVEMEDTDSFEFMDSSPSNLTPGSLQNKVFGGSVDQLTPGKNQSPARQNLFNGGSKLNRVNWGDSGSPFPSKDANSQGNHSTRDIGVQFNAVEFKRSTEELKLRYPNNEEGVSKTVKRKRKSEPKTVDGQEPSAENEEEAEMRYRFYESASARKRTVTAEERERAINDAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQVADGRQWPVRCLYRGGRAKLSQGWFEFTLENNLGEGDVCVFELLRTRDVVLQVTLFRLTEEVGLLEAPPMQQPSPNVSHSKLLNPHLQHRVSTTKMVRN* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3387 437 CDD B3_DNA 300 395 IPR003340 GO:0003677
Lja2g3387 437 PANTHER B3 DOMAIN-CONTAINING 1 427 - -
Lja2g3387 437 SMART B3_2 6 98 IPR003340 GO:0003677
Lja2g3387 437 SMART B3_2 302 397 IPR003340 GO:0003677
Lja2g3387 437 SUPERFAMILY DNA-binding pseudobarrel domain 2 97 IPR015300 -
Lja2g3387 437 MobiDBLite consensus disorder prediction 154 209 - -
Lja2g3387 437 Pfam B3 DNA binding domain 7 96 IPR003340 GO:0003677
Lja2g3387 437 Pfam B3 DNA binding domain 305 395 IPR003340 GO:0003677
Lja2g3387 437 SUPERFAMILY DNA-binding pseudobarrel domain 295 396 IPR015300 -
Lja2g3387 437 MobiDBLite consensus disorder prediction 228 262 - -
Lja2g3387 437 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 427 - -
Lja2g3387 437 Gene3D - 1 99 IPR015300 -
Lja2g3387 437 ProSiteProfiles B3 DNA-binding domain profile. 302 397 IPR003340 GO:0003677
Lja2g3387 437 Gene3D - 279 399 IPR015300 -
Lja2g3387 437 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Lja2g3387 437 CDD B3_DNA 4 96 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3387 Lja-Chr2 77583192 77586191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3387 1 398 B3 DNA Binding Superfamily AT3G18990 49.505 1.74e-126 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja2g3387 B3 3.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3387 - - gmx:100789352 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3387 2 77583192 77586191 Lja2g3387 2 77583192 77586191 ECH